| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,139,671 | A→T | 9.1% | R165R (CGT→CGA) | PP_5481 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,139,671 | 0 | A | T | 9.1% | 217.1 / 9.0 | 75 | R165R (CGT→CGA) | PP_5481 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (30/38); new base T (3/4); total (33/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTACGGCATTCTAGGGGTGTCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACTGGAAGGTCAG > NC_002947/2139522‑2139820 | gCTACGGCATTCTAGGGGTGTCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGcga > 1:246279/1‑150 (MQ=255) aCGGCATTCTAGGGGTGTCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGcgacga > 2:1121609/1‑150 (MQ=255) cGGCATTCTAGGGGTGTCGGACATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCgacgac > 2:776505/1‑150 (MQ=255) ggCATTCTAGGGGTGTCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGacgacg > 2:1378797/1‑150 (MQ=255) tAGGGGTGTCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGc < 1:1415426/150‑1 (MQ=255) tAGGGGTGTCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCAGTGGCGTCGTCGCCAATGc < 2:815372/150‑1 (MQ=255) ggggTGTCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCg < 2:1227502/150‑1 (MQ=255) gtgtCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGcc > 1:1363727/1‑150 (MQ=255) tCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCAGTGGCGTCGTCGCCAATGCCggtgcaa < 2:1110002/150‑6 (MQ=255) ggATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCGCTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGcccaccc > 2:1548730/1‑150 (MQ=255) ggATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGcccaccc > 2:323556/1‑150 (MQ=255) gagatCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTAAGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGcccaccca > 1:1056480/4‑150 (MQ=255) atatCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCccacccac < 2:574379/150‑1 (MQ=255) cAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAg‑c < 1:1236743/150‑1 (MQ=255) gCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACCCCACTGCCGGCCCACCCACCAG‑CGCCAGTAg > 2:773336/1‑150 (MQ=255) aCGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGaa > 2:214338/1‑150 (MQ=255) cGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACAtg < 1:1168265/150‑1 (MQ=255) cGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACAtg < 1:323556/150‑1 (MQ=255) cACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCCCCAG‑CGCCAGTAGAACAtggtgg < 1:1124733/150‑1 (MQ=255) cTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGcga > 1:259364/1‑101 (MQ=255) cTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGcga < 2:259364/101‑1 (MQ=255) cTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGcc < 1:1505130/132‑1 (MQ=255) cTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGcc > 2:1505130/1‑132 (MQ=255) cTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGgaga > 2:1000383/1‑150 (MQ=255) tCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAg < 2:342474/150‑1 (MQ=255) tggtggCCACTGCGGTGCTCTACGTTGTNTGCGTTCGCTTGCTGNTNANCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCa > 1:906213/1‑150 (MQ=255) ggtggCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCaa < 1:810898/150‑1 (MQ=255) cGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGc > 2:1376281/1‑150 (MQ=255) ggTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGca > 2:283197/1‑150 (MQ=255) tACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCaa < 1:592843/131‑1 (MQ=255) tACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCaa > 1:1378628/1‑131 (MQ=255) tACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCaa > 2:592843/1‑131 (MQ=255) tACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCaa < 2:1378628/131‑1 (MQ=255) tACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAg < 2:1004036/132‑1 (MQ=255) tACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAg > 1:1004036/1‑132 (MQ=255) aCGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTa > 2:81809/1‑125 (MQ=255) aCGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTa < 1:81809/125‑1 (MQ=255) cGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAg‑c < 2:172835/99‑1 (MQ=255) cGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAg‑c > 1:172835/1‑99 (MQ=255) gttgttTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGca > 2:614836/1‑150 (MQ=255) ttGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCAcacca < 2:246279/150‑1 (MQ=255) gTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGccc < 2:1608997/127‑1 (MQ=255) gTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGccc > 1:1608997/1‑127 (MQ=255) ttCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCAccgag > 2:614073/1‑150 (MQ=255) cTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGAt < 1:1000424/114‑1 (MQ=255) cTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGAt > 2:1000424/1‑114 (MQ=255) tGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAg‑cgc < 1:420799/81‑1 (MQ=255) tGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAg‑cgc > 2:420799/1‑81 (MQ=255) tCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCCGTAGAAGATGGTGGAGCAGTCAGCCCTGGCGCGCACCACCACGCCGCACACCACCCACCCGCgcaggcag > 2:430298/1‑150 (MQ=255) cAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAgg < 1:1121609/150‑1 (MQ=255) cAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAgg < 1:614073/150‑1 (MQ=255) aGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAggg > 1:40086/1‑150 (MQ=255) cGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCATCACGCCGCACACCACCGAGCCGAGCAGGAAGGGtt < 1:1548730/150‑1 (MQ=255) cGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGtt < 2:1056480/150‑1 (MQ=255) gCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGc < 1:776505/150‑1 (MQ=255) cgcgGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGgag < 1:824231/88‑1 (MQ=255) cgcgGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGgag > 2:824231/1‑88 (MQ=255) gcgGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCcac < 2:906213/150‑1 (MQ=255) tGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGc > 2:641668/1‑102 (MQ=255) tGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGc < 1:641668/102‑1 (MQ=255) cTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCt < 1:1378797/150‑1 (MQ=255) gCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCg < 1:1000383/150‑1 (MQ=255) ttGCACTGGCATTGGCGACGACGCCACTGACGGCCC‑CCCCCCAGCCGTTAGGAGAACATGGTGGAGAAGCCAAGGTTGATGCCCAGCATCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTg < 1:773336/150‑1 (MQ=255) ttGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCAccgagccga < 2:50777/112‑1 (MQ=255) ttGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCAccgagccga > 1:50777/1‑112 (MQ=255) ttGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCt > 2:485038/1‑142 (MQ=255) ttGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCt < 1:485038/142‑1 (MQ=255) tgggccGGCAGTGGCGTCGTCGCCAATGCCGGTCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGa > 2:1513341/5‑150 (MQ=255) aCCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATcc > 2:812581/1‑150 (MQ=255) ccGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCcaca < 2:1558803/125‑1 (MQ=255) ccGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCcaca > 1:1558803/1‑125 (MQ=255) cGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTg > 2:1332819/1‑144 (MQ=255) cGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTg < 1:1332819/144‑1 (MQ=255) ggCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACt < 1:812581/150‑1 (MQ=255) ggCATTGGCGAAGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTATAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGACACAGCGTCGACAGCTGGTCGGTGATCCACt < 1:712469/150‑1 (MQ=255) gcagtGGCGTCGTCGCCAATGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACt < 1:550415/145‑1 (MQ=255) gCAGTGGCGTCGTCGCCAATGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACt > 2:551471/1‑149 (MQ=255) gCAGTGGCGTCGTCGCCAATGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACt > 2:550415/1‑149 (MQ=255) gCAGTGGCGTCGTCGCCAATGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACt < 1:551471/149‑1 (MQ=255) tGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACTGGAAg < 1:151486/150‑1 (MQ=255) ggCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCCGTTGGGCATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACTGGAAgg < 1:430298/150‑1 (MQ=255) acgacgCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACTGGAAGGTCAg < 2:1363727/150‑1 (MQ=255) | GCTACGGCATTCTAGGGGTGTCGGATATCAGCATTGGCACGGCGATCACCTTCATGCTGGTGGCCACTGCGGTGCTCTACGTTGTTTGCGTTCGCTTGCTGGTCAGCGGCCGCGGCATGCGGGCCTGAAGCCTTGCACCGGCATTGGCGACGACGCCACTGCCGGCCCACCCACCAG‑CGCCAGTAGAACATGGTGGAGAAGTAGGCAAGGATGCCCAGCACCACGCCGCACACCACCGAGCCGAGCAGGAAGGGTTGCCACAGCGTCGACAGCTGGTCGGTGATCCACTGGAAGGTCAG > NC_002947/2139522‑2139820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |