Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,271,709 | C→T | 8.1% | intergenic (+50/‑50) | PP_t32 → / → PP_t33 | tRNA‑Asp/tRNA‑Asp |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,271,709 | 0 | C | T | 8.1% | 136.3 / 2.2 | 49 | intergenic (+50/‑50) | PP_t32/PP_t33 | tRNA‑Asp/tRNA‑Asp |
Reads supporting (aligned to +/- strand): ref base C (21/24); new base T (2/2); total (23/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 |
AGCCAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTCAAGGTCCCTAG > NC_002947/2271562‑2271856 | aGCCAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACAt < 2:1085365/150‑1 (MQ=255) gagGTACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTgg < 1:810083/150‑1 (MQ=255) gagGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTgg < 2:1414600/150‑1 (MQ=255) cGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGAt < 2:1391317/150‑1 (MQ=255) gCGGTAGTTCAGTCGGTTACAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCNCCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCaa < 1:1102365/150‑1 (MQ=255) ttAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACAt < 2:1044505/110‑1 (MQ=255) ttAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACAt > 1:1044505/1‑110 (MQ=255) tAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGaa < 1:1255725/150‑1 (MQ=255) cgacccccGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTATCAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAAc < 1:1361467/144‑1 (MQ=255) cGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGc > 2:231785/1‑150 (MQ=255) ggCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATCGGAGCCTGGCACCGGTCTGAAGCCACAAAGCACATCCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATAAGCa > 2:1554341/1‑150 (MQ=38) gCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGc < 1:1560434/108‑1 (MQ=255) gCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGc > 2:1560434/1‑108 (MQ=255) gCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAg < 2:1358432/150‑1 (MQ=255) tCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCTCCGGTCAGAAACAACAAGGCACATGCCTTTGGCTGATCTCAGGTTCAATCGGTCACACGCCTGCACGATACGCAGCGGTa > 2:1618103/1‑150 (MQ=37) tCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGCTCTGAAGCC‑CAAGGCATGTGCCTTgtggc < 1:374773/103‑5 (MQ=25) tCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGCTCTGAAGCC‑CAAGGCATGTGCCTTgtggc > 2:374773/1‑99 (MQ=25) cGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGtt < 2:1338387/150‑1 (MQ=255) ggggTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAggc < 1:231785/150‑3 (MQ=255) ggggTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTGCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTc < 1:827673/150‑1 (MQ=255) gAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGcaca > 1:209082/1‑71 (MQ=255) gAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGcaca < 2:209082/71‑1 (MQ=255) ccGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTgg > 2:1061545/1‑74 (MQ=255) ccGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTgg < 1:1061545/74‑1 (MQ=255) ccGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTg < 2:482930/73‑1 (MQ=255) ccGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTg > 1:482930/1‑73 (MQ=255) cGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTc > 1:1560534/1‑150 (MQ=255) tCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGgc > 2:399991/1‑94 (MQ=255) tCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGgc < 1:399991/94‑1 (MQ=255) tCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCa > 2:482414/1‑149 (MQ=255) tCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCa < 1:482414/149‑1 (MQ=255) cGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGc < 2:1560534/150‑1 (MQ=255) cgcCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCATGTGCCTTgtg > 1:297810/1‑63 (MQ=255) cgcCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCATGTGCCTTgtg < 2:297810/65‑3 (MQ=255) gTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCg > 1:624506/1‑150 (MQ=255) gTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCg > 2:1387346/1‑150 (MQ=255) tAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGa < 2:624506/150‑1 (MQ=255) aGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCACAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTcc > 2:703011/1‑150 (MQ=255) gTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCg > 2:479759/1‑150 (MQ=255) gCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGcag < 2:917762/81‑3 (MQ=255) gCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGcag > 1:917762/1‑79 (MQ=255) gCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGcc > 2:574013/1‑150 (MQ=255) cGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACAGTACGCAGCCGCGGCGCACTCGGATAGAATACCAGCCTGTCACTCCGGGCCGCGCGGCCCCGTGTCCCGTCCCCAACGCCATCt > 2:124223/1‑150 (MQ=16) ggTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCtt < 1:1387346/150‑1 (MQ=255) tGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATa < 1:912933/64‑1 (MQ=255) tGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATa > 2:912933/1‑64 (MQ=255) aaGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATAc < 2:1339084/91‑1 (MQ=255) aaGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATAc > 1:1339084/1‑91 (MQ=255) acaAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGAt > 2:570749/1‑56 (MQ=255) acaAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGAt < 1:570749/56‑1 (MQ=255) acaAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTCAAGGt > 2:877498/1‑150 (MQ=255) cacaTGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTCAAGGTCCCTAg < 1:877498/150‑1 (MQ=255) | AGCCAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTGGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTCAAGGTCCCTAG > NC_002947/2271562‑2271856 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |