Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,560,507 G→C 6.3% W142C (TGG→TGC) ‡ PP_2243 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,560,5070GC 6.3% 204.0 / 4.3 65W142C (TGG→TGC) ‡PP_2243hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (31/29);  new base C (2/2);  total (34/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-01

TTGCGACCTTGGGCGTTGGCAAGGTGTGTCGTTGAAGCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTATCGACGTGCTGCCGCTGTCACGTCTGCAATTG  >  NC_002947/2560360‑2560648
                                                                                                                                                   |                                                                                                                                             
ttGCGACCTTGGGCGTTGGCAAGGTGTGTCGTTGAAGCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCctggct                                                                                                                                             >  1:1041505/1‑150 (MQ=255)
 tGCGACCTTGGGCGTTGGCAAGGTGTGTCGTTGAAGCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCctggctg                                                                                                                                            >  2:391329/1‑150 (MQ=255)
     aCCTTGGGCGTTGGCAAGGTGTGTCGTTGAAGCAACTACAAGCCGAGCAAACGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGAATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCAAGGCCGCCTGGCTggcgg                                                                                                                                        >  2:1293954/1‑150 (MQ=255)
        ttGGGCGTTGGCAAGGTGTGTCGTTGAAGCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGAAGAATGACTGGCGGCCt                                                                                                                                     >  2:1168073/1‑150 (MQ=255)
          gggCGTTGGCAAGGTGTGTCGTTGAAGCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTTAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCAGCCAGGCGGCCtgg                                                                                                                                   <  1:1081966/150‑3 (MQ=255)
               ttGGCAAGGTGTGTCGTTGAAGCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAg                                                                                                                              <  1:272049/150‑1 (MQ=255)
                            tCGTTGAAGCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGActgg                                                                                                                 <  2:1041505/150‑1 (MQ=255)
                                 gAAGCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACtggctggc                                                                                                            <  1:1547881/150‑1 (MQ=255)
                                    gCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCgg                                                                                                                         <  1:1147760/134‑1 (MQ=255)
                                    gCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCgg                                                                                                                         >  2:1147760/1‑134 (MQ=255)
                                    gCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGACCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGt                                                                                                         >  1:999397/1‑150 (MQ=255)
                                       aCTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGac                                                                                                      >  2:1553149/1‑150 (MQ=255)
                                        cTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCggg                                                                                                                        >  1:583141/1‑131 (MQ=255)
                                        cTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCggg                                                                                                                        <  2:583141/131‑1 (MQ=255)
                                          aCAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGaccca                                                                                                   >  1:455259/1‑150 (MQ=255)
                                           cAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGacccac                                                                                                  <  2:906625/150‑1 (MQ=255)
                                           cAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGacccac                                                                                                  >  1:565078/1‑150 (MQ=255)
                                            aaGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGacccacc                                                                                                 >  1:1404180/1‑150 (MQ=255)
                                                 gAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGActgg                                                                                                                 >  2:1182112/1‑129 (MQ=255)
                                                 gAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGActgg                                                                                                                 <  1:1182112/129‑1 (MQ=255)
                                                  aGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATgg                                                                                           <  1:1147332/150‑1 (MQ=255)
                                                    cAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTc                                                                                         <  2:1404180/150‑1 (MQ=255)
                                                        cGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATgc                                                                                     >  1:267988/1‑150 (MQ=255)
                                                                   gCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGacccacc                                                                                                 <  2:695924/127‑1 (MQ=255)
                                                                   gCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGacccacc                                                                                                 >  1:695924/1‑127 (MQ=255)
                                                                   gCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATgc                                                                                     <  2:1425060/139‑1 (MQ=255)
                                                                   gCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATgc                                                                                     >  1:1425060/1‑139 (MQ=255)
                                                                   gCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTg                                                                          <  2:547235/150‑1 (MQ=255)
                                                                     cGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAg                                                                                                                              <  1:359970/96‑1 (MQ=255)
                                                                     cGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAg                                                                                                                              >  2:359970/1‑96 (MQ=255)
                                                                     cGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGt                                                                        >  2:740726/1‑150 (MQ=255)
                                                                       aaTGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTAc                                                                      <  1:391329/150‑1 (MQ=255)
                                                                           gCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCgg                                                                                                                         >  1:1251194/1‑95 (MQ=255)
                                                                           gCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCgg                                                                                                                         <  2:1251194/95‑1 (MQ=255)
                                                                                 ggATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            <  1:1420180/150‑1 (MQ=255)
                                                                                 ccattcGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCCGCTCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCATTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            <  1:429215/145‑1 (MQ=255)
                                                                                    tCCGGCCAGTGCCGTGCCTGGTGGTGCGTCGTTCCCTGCCCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGgtg                                                         <  2:999397/150‑1 (MQ=255)
                                                                                    tCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCtgg                                                                                                                                   >  2:1226033/1‑74 (MQ=255)
                                                                                    tCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCtgg                                                                                                                                   <  1:1226033/76‑3 (MQ=255)
                                                                                    tCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACACACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            >  1:306171/1‑147 (MQ=255)
                                                                                    tCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACACACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            <  2:306171/147‑1 (MQ=255)
                                                                                            gTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCGCCCTATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGa                                                 <  1:1210887/150‑1 (MQ=255)
                                                                                                   gCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACa                                                                                                                               >  2:338575/1‑65 (MQ=255)
                                                                                                   gCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACa                                                                                                                               <  1:338575/65‑1 (MQ=255)
                                                                                                   gCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCgg                                          >  2:1226437/1‑150 (MQ=255)
                                                                                                    cATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCggg                                         <  1:1553149/150‑1 (MQ=255)
                                                                                                      tggtggTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            <  2:634706/129‑1 (MQ=255)
                                                                                                      tggtggTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            >  1:634706/1‑129 (MQ=255)
                                                                                                           gtgAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTa                                  >  1:143672/1‑150 (MQ=255)
                                                                                                            tgAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTAt                                 >  1:601135/1‑150 (MQ=255)
                                                                                                                  gTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGt                                                                                                                       >  2:1180455/1‑58 (MQ=255)
                                                                                                                  gTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGt                                                                                                                       <  1:1180455/58‑1 (MQ=255)
                                                                                                                       cTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTATCGACGtgctgc                      >  1:1419780/1‑150 (MQ=255)
                                                                                                                             tATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTATCGACGTGCTGCCGCTGt                >  1:1623763/1‑150 (MQ=255)
                                                                                                                             tATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGCTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTATCGACGTGCTGCCGCTGt                >  2:385686/1‑150 (MQ=255)
                                                                                                                                   tgtcgaaGGCCGCCAGCCAGGCGGCCTTCGACAGGCCGGGTGAGTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTATCGACGTGCTGCCGCTGTCACGTc          >  2:1189096/7‑150 (MQ=255)
                                                                                                                                       gaaGGCCGCCAGCCAGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAg                                                                    <  1:137553/86‑1 (MQ=39)
                                                                                                                                       gaaGGCCGCCAGCCAGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAg                                                                    >  2:137553/3‑88 (MQ=38)
                                                                                                                                        cAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTATCGACGTGCTGCCGCTGTCACGTCTGCaa     >  2:1339414/1‑150 (MQ=255)
                                                                                                                                         aGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGgt                                                          <  2:416335/96‑1 (MQ=255)
                                                                                                                                         aGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGgt                                                          >  1:416335/1‑96 (MQ=255)
                                                                                                                                           gccgccTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            <  2:736399/92‑1 (MQ=255)
                                                                                                                                           gccgccTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            >  1:736399/1‑92 (MQ=255)
                                                                                                                                           gccgccTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTATCGACGTGCTGCCGCTGTCACGTCTGCAATTg  <  2:143672/150‑1 (MQ=255)
                                                                                                                                           gccgccTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTATCGACGTGCTGCCGCTGTCACGTCTGCAATTg  >  1:132095/1‑150 (MQ=255)
                                                                                                                                               ccTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            >  1:1226107/1‑88 (MQ=255)
                                                                                                                                               ccTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTgg                                                            <  2:1226107/88‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                             
TTGCGACCTTGGGCGTTGGCAAGGTGTGTCGTTGAAGCAACTACAAGCCGAGCAACCGCAGGCGTTGGCCGAATGGCTGCAGGATCCGGCCAGTGCCGTGCATGGTGGTGAGTCGTTCGCTGCGCTATGCCAGCGCCAGGCCGCCTGGCTGGCGGCCTTCGACAGGCCGGGTGACTGGCTGGCGGTGACCCACCCGATGGTCATGCGCGCCATGCTGGTACAGGTGCTTGGGTGTCCGATGAGTGCCGGGCAGCGTATCGACGTGCTGCCGCTGTCACGTCTGCAATTG  >  NC_002947/2560360‑2560648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: