Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,031,138 | C→G | 7.1% | I134M (ATC→ATG) | mgtA → | ATP‑dependent magnesium transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,031,138 | 0 | C | G | 7.1% | 163.3 / 2.8 | 52 | I134M (ATC→ATG) | mgtA | ATP‑dependent magnesium transporter |
Reads supporting (aligned to +/- strand): ref base C (28/20); new base G (2/2); total (30/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CACGCCCTGGTGCAACTGCTCAAGGCCCTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGCAGATCGGGCAAGCCCCGCGCCTGCGCGAAG > NC_002947/3030989‑3031286 | cACGCCCTGGTGCAACTGCTCAAGGCCCTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGtcatcatcatc < 1:475449/150‑1 (MQ=255) ccTGGTGCAACTGCTCAAGGCCCTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGAc > 1:7519/1‑150 (MQ=255) tGGTGCAACTGCTCAAGGCCCTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCa < 2:1575402/150‑1 (MQ=255) aCTGCTCAAGGCCCTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGCCGACCCCGATCGGACCAAGGTCATCATCATCATGACCATGGTCAg > 2:1621707/1‑150 (MQ=255) aGGCCCTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTcagca < 1:1333691/150‑1 (MQ=255) cccTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGcc < 2:1552549/150‑1 (MQ=255) ccTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGCTACTAGCATCATGACCATGGTCAGCCTCAGCAGCct < 1:1621707/150‑1 (MQ=255) cTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCctg > 1:877659/1‑150 (MQ=255) ccGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGTTCATGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTc > 1:1348894/1‑150 (MQ=255) cTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATgg > 1:1079668/1‑116 (MQ=255) cTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATgg < 2:1079668/116‑1 (MQ=255) tATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAg > 1:1638186/1‑150 (MQ=255) gTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTAc < 2:901353/150‑1 (MQ=255) gTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTAc > 2:1248685/1‑150 (MQ=255) ctgctgACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGc > 2:1564335/1‑150 (MQ=255) ctgACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACGATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCg > 2:1563557/1‑150 (MQ=255) aCCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAAc > 1:965315/1‑150 (MQ=255) ccTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCa > 1:641425/1‑132 (MQ=255) ccTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCa < 2:641425/132‑1 (MQ=255) tGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAgg > 1:228610/1‑150 (MQ=255) gCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCt > 1:766512/1‑150 (MQ=255) cGGGATCAGCTTCGTCACAGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGc < 2:999913/150‑1 (MQ=255) gggATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGcc < 1:1564335/150‑1 (MQ=255) gggATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGcc < 2:7519/150‑1 (MQ=255) tCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACAATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAg > 2:1034189/1‑150 (MQ=255) ctactGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGt < 1:1548268/150‑1 (MQ=255) cGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACgg > 1:1016642/1‑150 (MQ=255) gcAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCAc > 1:578097/1‑137 (MQ=255) gcAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCAc < 2:578097/137‑1 (MQ=255) ggCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTg < 2:877659/150‑1 (MQ=255) gCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTgc > 1:1395304/1‑150 (MQ=255) gAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGgtg < 1:409354/144‑1 (MQ=255) gAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGgtg > 2:409354/1‑144 (MQ=255) gAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTgcgc > 1:978807/1‑150 (MQ=255) aGACGACGCCGACCTGACGAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGa > 1:1121662/1‑150 (MQ=255) aGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGa < 2:1395304/150‑1 (MQ=255) gacgacGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAg > 2:942026/1‑150 (MQ=255) gacgacGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAg < 2:965315/150‑1 (MQ=255) gacgacGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAg < 2:1348894/150‑1 (MQ=255) acgacgCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGCCCGGAAAGTTAATTCTTGTCCATTGGTTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGc > 1:1013043/1‑150 (MQ=255) cgacgCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGCa < 2:1638186/150‑1 (MQ=255) ccGACCTGACCAAGGTCATCATCATGATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGcgccgc < 1:1106531/140‑1 (MQ=255) ccGACCTGACCAAGGTCATCATCATGATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGcgccgc > 2:1106531/1‑140 (MQ=255) ccGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGTAGATCg > 2:97923/1‑150 (MQ=255) cGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCt > 2:359615/1‑88 (MQ=255) cGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCt < 1:359615/88‑1 (MQ=255) ctcaCCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCGCGGTGCTGCGCCGCGAGCAGAGCGGGCaa > 2:521347/4‑150 (MQ=255) cTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGCAGATCGGGCaa > 1:562770/1‑150 (MQ=255) ccatggTCATGATGATGATGACCTTGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGAcgc < 1:319300/84‑1 (MQ=37) ccATGGTCATGATGATGATGACCTTGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGAcgc > 2:319300/1‑88 (MQ=25) ccAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGcc < 1:1057622/116‑1 (MQ=255) ccAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGcc > 2:1057622/1‑116 (MQ=255) aGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGCAGATCGGGCAAGCCCcgc > 1:1126359/1‑150 (MQ=255) atcatcatGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGCAGATCGGGCAAGCCCCGCGCCTgcgc > 2:497619/1‑150 (MQ=255) tcatGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGCAGATCGGGCAAGCCCCGCGCCTGCGCGAAg > 1:1488577/1‑150 (MQ=255) tcatGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGCAGATCGGGCAAGCCCCGCGCCTGCGCGAAg > 2:1341539/1‑150 (MQ=255) | CACGCCCTGGTGCAACTGCTCAAGGCCCTGAACAACCCGTTCATCTATGTACTGCTGACCCTGGCCGGGATCAGCTTCGTCACCGACTACTGGCTGCCGGTCAGCGCAGGCGAAGCAGACGACGCCGACCTGACCAAGGTCATCATCATCATGACCATGGTCAGCCTCAGCAGCCTGCTGCGATTCTGGCAGGAGTACCGCTCGAACAAGGCTGCCGACGCGCTCAAAGCAATGGTGCGCACTACGGCCACGGTGTTGCGCCGCGAGCAGATCGGGCAAGCCCCGCGCCTGCGCGAAG > NC_002947/3030989‑3031286 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |