Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,241,024 A→C 6.0% D226A (GAC→GCC)  PP_2838 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,241,0240AC 6.0% 186.8 / 4.8 74D226A (GAC→GCC) PP_2838hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (34/35);  new base C (2/3);  total (36/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.86e-01

GGTCAGACTTCGTCCTCGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAATGGGACCTGGCCACGGCGGTGTA  >  NC_002947/3240877‑3241162
                                                                                                                                                   |                                                                                                                                          
ggTCAGACTTCGTCCTCGCCGACCTGGGCTTGCTGCGTCACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGAcc                                                                                                                                          <  1:1250245/150‑1 (MQ=255)
 gTCAGACTTCGTCCTCGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCc                                                                                                                                         <  1:776762‑M2/150‑2 (MQ=255)
 gTCAGACTTCGTCCTCGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCc                                                                                                                                         <  1:186215‑M2/150‑2 (MQ=255)
    aGACTTCGTCCTCGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCccct                                                                                                                                      <  2:776641‑M2/150‑5 (MQ=255)
      aCTTCGTCCTCGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCccctgc                                                                                                                                    >  2:931429‑M2/1‑144 (MQ=255)
              cTCGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCTATCGGGCTTCACCATTGCGCTGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCtt                                                                                                                            <  1:1020486/150‑1 (MQ=255)
               tCGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTg                                                                                                                           >  2:617912/1‑150 (MQ=255)
               tCGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTg                                                                                                                           >  2:1543483/1‑150 (MQ=255)
                       cTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTg                                                                                                                   >  1:1361785/1‑150 (MQ=255)
                        tGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCGTGATTCGCGTGCCTGGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCGGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGc                                                                                                                  <  1:1195413/150‑1 (MQ=255)
                           gCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAgg                                                                                                               <  2:1266599/150‑1 (MQ=255)
                                 tgcGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGc                                                                                                         >  1:466506/1‑150 (MQ=255)
                                 tgcGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGc                                                                                                         >  1:871080/1‑150 (MQ=255)
                                    gTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAATGGCAGGAGTTCGACCTGGCCATGGCGCTGCACAATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCTACTCTTCAGGTCTTGcaca                                                                                                      >  2:227980/1‑150 (MQ=255)
                                    gTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGcaca                                                                                                      >  2:1498114/1‑150 (MQ=255)
                                         gAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGcaca                                                                                                      <  2:78663/145‑1 (MQ=255)
                                         gAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGcaca                                                                                                      >  1:78663/1‑145 (MQ=255)
                                         gAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACagcagc                                                                                                 >  2:1094547/1‑150 (MQ=255)
                                         gAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACagcagc                                                                                                 >  2:1518421/1‑150 (MQ=255)
                                            cAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAAc                                                                                              <  2:1355487/150‑1 (MQ=255)
                                               gTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAAcccc                                                                                           >  2:532858/1‑150 (MQ=255)
                                                  ccGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCTATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCctgg                                                                                        <  2:186215/150‑1 (MQ=255)
                                                  ccGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCctgg                                                                                        <  1:776641/150‑1 (MQ=255)
                                                    gTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTTCAGGGCCTGCACATCATCAACCCctggct                                                                                      >  2:427957/1‑150 (MQ=255)
                                                      tCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATTTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCctgcctgg                                                                                    <  1:227980/150‑1 (MQ=255)
                                                       cAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCtggctggc                                                                                   <  1:427957/150‑1 (MQ=255)
                                                          cccTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCtt                                                                                                                            >  1:46887/1‑106 (MQ=255)
                                                          cccTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCtt                                                                                                                            <  2:46887/106‑1 (MQ=255)
                                                          cccTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGc                                                                                                                          >  1:951578/1‑108 (MQ=255)
                                                          cccTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGc                                                                                                                          <  2:951578/108‑1 (MQ=255)
                                                            cTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGGGTCGCCGccctgctccaggcgctcg                                                                                                                        <  2:770525‑M2/108‑19 (MQ=255)
                                                            cTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGGGTCGCCGccctgctccaggcgctcg                                                                                                                        >  1:770525‑M2/1‑90 (MQ=255)
                                                            cTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAAcccc                                                                                           >  1:724708/1‑137 (MQ=255)
                                                            cTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAAcccc                                                                                           <  2:724708/137‑1 (MQ=255)
                                                             tGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGgcg                                                                             >  1:783384/1‑150 (MQ=255)
                                                             tGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGgcg                                                                             >  2:1273155/1‑150 (MQ=255)
                                                             tGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGCGCGGCGACCCCCTGCCGATCCTTGCCACCCTGGAGGGCCTGCGCAGCAGCAACCCCTGGCTGGCCCGgcg                                                                             >  1:771877/1‑150 (MQ=255)
                                                               aTTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGcc                                                                           >  2:1494481/1‑150 (MQ=255)
                                                                 tCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCAt                                                                         <  1:1498114/150‑1 (MQ=255)
                                                                       gCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCgg                                                                   <  1:532858/150‑1 (MQ=255)
                                                                       gCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCACCATGCGCgg                                                                   >  1:1628228/1‑150 (MQ=255)
                                                                         cTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGGGTCGCCGccctgctccag                                                                                                                               >  2:342198‑M2/1‑77 (MQ=255)
                                                                         cTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGGGTCGCCGccctgctccag                                                                                                                               <  1:342198‑M2/88‑12 (MQ=255)
                                                                         cTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATcc                                                                                                                              <  1:1085721/89‑1 (MQ=255)
                                                                         cTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATcc                                                                                                                              >  2:1085721/1‑89 (MQ=255)
                                                                             cagcaACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCATGCACAGCAGCAGCCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCaa                                                             <  1:1612100/150‑1 (MQ=255)
                                                                              agcaACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAAt                                                            >  1:316014/1‑150 (MQ=255)
                                                                              agcaACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAAt                                                            >  1:1298341/1‑150 (MQ=255)
                                                                                  cgatctcGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCCGCAGGGCCTGCACAGCAGCAGCCCCTGGCTGGGTTGGCGCCATGCGCGGCCGCAATTCGc                                                        <  1:1456265/144‑1 (MQ=255)
                                                                                        agctGTCTACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTggg                                                  <  1:401974/147‑1 (MQ=255)
                                                                                         gATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCACGGCCACCACAGCAGCAGCCCCTGGCTGGCCCGGCGCCATGCGCGGCCGCAATTCGccagatcg                                                 >  2:1456265/1‑144 (MQ=255)
                                                                                          aTGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGcc                                                >  2:1615397/1‑150 (MQ=255)
                                                                                           tGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCca                                               <  2:871080/150‑1 (MQ=255)
                                                                                               gACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCctggc                                                                                       <  1:1573737/106‑1 (MQ=255)
                                                                                               gACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCctggc                                                                                       >  2:1573737/1‑106 (MQ=255)
                                                                                                aCCTTGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCGCGCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACGAt                                          >  1:934004/1‑150 (MQ=255)
                                                                                                aCCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAAt                                          >  1:1414400/1‑150 (MQ=255)
                                                                                                        aTGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCgg                                  >  1:809836/1‑150 (MQ=255)
                                                                                                              cTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGt                            <  2:316014/150‑1 (MQ=255)
                                                                                                              cTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGt                            <  2:1414400/150‑1 (MQ=255)
                                                                                                              cTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGt                            <  1:531224/150‑1 (MQ=255)
                                                                                                              cTGCACCATTGCGCAGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGt                            <  2:776762/150‑1 (MQ=255)
                                                                                                                gCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGa                          >  1:1486189/1‑150 (MQ=255)
                                                                                                                 cACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTgg                                                   <  1:632610/124‑1 (MQ=255)
                                                                                                                 cACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTgg                                                   >  2:632610/1‑124 (MQ=255)
                                                                                                                   ccATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAATg                       <  1:1543483/150‑1 (MQ=255)
                                                                                                                    cATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAATgg                      <  1:1094547/150‑1 (MQ=255)
                                                                                                                       tGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAATGGGAc                   <  1:800101/150‑1 (MQ=255)
                                                                                                                          cccGAGGGTCCGGAGCAGGGCGCCGCCCCCCTCCCTATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAATGGGACCTg                <  2:1340896/149‑1 (MQ=255)
                                                                                                                                  ccTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAATGGGACCTGGCCAcggc        <  1:221924/150‑1 (MQ=255)
                                                                                                                                     ggAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAATGGGACCTGGCCACGGCGgt     <  1:1273155/150‑1 (MQ=255)
                                                                                                                                        gCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAATGGGACCTGGCCACGGCGGTGTa  >  1:383598/1‑150 (MQ=255)
                                                                                                                                            ggcggcGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAAt                        <  1:951617/124‑1 (MQ=255)
                                                                                                                                            ggcggcGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAAt                        >  2:951617/1‑124 (MQ=255)
                                                                                                                                                   |                                                                                                                                          
GGTCAGACTTCGTCCTCGCCGACCTGGGCTTGCTGCGTTACGAGCAGGTGCCGTTCAGCCCTGATTCGCGTGCCTTGCAGCAACGTGACGATGTCGACCTGGCCATGGCGCTGCACCATTGCGCCGAGCGCCTGGAGCAGGGCGGCGACCCCCTGCCGATCCTTGCCACCCTGCAGGGCCTGCACAGCAGCAACCCCTGGCTGGCCCGGCGCCATGCGCGGCTGCAATTCGCCGTGGGCCAACAATGCGAGCGGCTGGGTGAATGGGACCTGGCCACGGCGGTGTA  >  NC_002947/3240877‑3241162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑