| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,755,655 | C→T | 6.5% | F351F (TTC→TTT) | PP_3319 → | GGDEF domain‑containing sensory box protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,755,655 | 0 | C | T | 6.5% | 173.7 / 3.1 | 62 | F351F (TTC→TTT) | PP_3319 | GGDEF domain‑containing sensory box protein |
| Reads supporting (aligned to +/- strand): ref base C (29/29); new base T (2/2); total (31/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.75e-01 | |||||||||||
CGCCAGTTGAGTATCAATGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACGGACCTGCTTC > NC_002947/3755509‑3755803 | cgcCAGTTGAGTATCAATGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCaaa < 2:857067/150‑1 (MQ=255) ttGAGTATCAATGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATc < 2:476437/150‑1 (MQ=255) tATCAATGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGa > 2:549206/1‑150 (MQ=255) agccaTGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCggg < 2:888496/150‑1 (MQ=255) agccaTGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCggg > 2:1055822/1‑150 (MQ=255) gccaTGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGc > 2:1581609/1‑150 (MQ=255) ccaTGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCa < 2:447348/150‑1 (MQ=255) aTGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCact < 1:338084/150‑1 (MQ=255) aCGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTAC‑TCGGCgcag < 2:953605/150‑4 (MQ=255) gTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAg < 1:549206/150‑1 (MQ=255) tttGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGt < 1:955780/150‑1 (MQ=255) gCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCg > 2:1615595/1‑137 (MQ=255) gCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCg < 1:1615595/137‑1 (MQ=255) cTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGTCGAGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCTATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTg > 2:1267854/1‑150 (MQ=255) ttAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCaa < 1:531266/103‑1 (MQ=255) ttAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCaa > 2:531266/1‑103 (MQ=255) tGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGa > 1:54647/1‑141 (MQ=255) tGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGa < 2:54647/141‑1 (MQ=255) tctGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGAGGTCATGTACCTCGACCTGGATGGATTCAAATCTATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGcaca > 2:504857/1‑150 (MQ=255) ctGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAg < 2:104248/150‑1 (MQ=255) tGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAgc > 1:1580410/1‑150 (MQ=255) gAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAgcgc > 2:1363270/1‑150 (MQ=255) aCCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGa < 1:1363270/150‑1 (MQ=255) cGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTc < 1:1597864/78‑1 (MQ=255) cGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTc > 2:1597864/1‑78 (MQ=255) gtgtCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCcagcag > 1:698164/1‑142 (MQ=255) gtgtCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCcagcag < 2:698164/142‑1 (MQ=255) gagtCGCAGCAACCGTCAACGTAAAGTTCAACTGGCGGTCGTTTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGgtccgtcc > 2:498840/3‑150 (MQ=255) tCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTg < 1:1630056/118‑1 (MQ=255) tCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTg > 2:1630056/1‑118 (MQ=255) tCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGc < 1:646858/150‑1 (MQ=255) cGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCt < 1:591854/150‑1 (MQ=255) agcCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATAcc < 1:1581609/150‑1 (MQ=255) cGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACcgtc > 1:832956/1‑150 (MQ=255) gTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGAc < 1:117097/65‑1 (MQ=255) gTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGAc > 2:117097/1‑65 (MQ=255) tAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGa < 2:803996/81‑1 (MQ=255) tAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGa > 1:803996/1‑81 (MQ=255) ttCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGa < 1:214804/91‑1 (MQ=255) ttCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGa > 2:214804/1‑91 (MQ=255) ttCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGggcg > 2:287758/1‑150 (MQ=255) tCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGAACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGggcgg < 2:664096/150‑1 (MQ=255) cTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGca < 1:235888/93‑1 (MQ=255) cTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGca > 2:235888/1‑93 (MQ=255) gCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAGGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAg > 1:1497621/1‑150 (MQ=255) gTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGCCTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGgtccgtcc < 2:588843/113‑1 (MQ=255) gTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGgtccgtcc > 1:588843/1‑113 (MQ=255) aTGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGa < 2:138752/116‑1 (MQ=255) aTGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGa > 1:138752/1‑116 (MQ=255) tACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGtt > 2:823833/1‑150 (MQ=255) aCATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGt > 2:687528/1‑141 (MQ=255) aCATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGt < 1:687528/141‑1 (MQ=255) cATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTct > 2:59710/1‑150 (MQ=255) cATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTct > 1:1072521/1‑150 (MQ=255) gttgatggatTTGAATCCATCCACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGa > 1:868663/4‑82 (MQ=38) gttgatggatTTGAATCCATCCACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGa < 2:868663/79‑1 (MQ=38) ttgatggatTTGAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTctgct < 2:1355404/143‑1 (MQ=255) ttgatggatTTGAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTctgct > 1:1355404/3‑145 (MQ=255) ggatTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTAt < 1:84102/113‑1 (MQ=255) ggatTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTAt > 2:84102/1‑113 (MQ=255) gatTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAGGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACGGACCTGc < 2:1497621/150‑1 (MQ=255) ttCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAg > 2:798272/1‑123 (MQ=255) ttCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAg < 1:798272/123‑1 (MQ=255) tCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACGGACCTGCTTc > 1:1391719/1‑150 (MQ=255) | CGCCAGTTGAGTATCAATGCCAGCCATGACGGGCTGACGGGTTTGCTTAACCGCCTGTCTCTGGAAGACCGGCTTGTCCAGGCGTGTCGCAGCAGCCGTCAACGTAAAGTTCAACTGGCGGTCATGTACATCGACCTGGATGGATTCAAATCCATCAACGACTCCATCGGGCACTACTTCGGCGATCAAGTGCTGATCGAGGTGGCACAGCGCTTGACCCAGCAGGTCCGTCCGGCTGATACCGTCGTGCGTATGGGCGGCGATGAGTTTGTCGTTCTGCTGACGGACCTGCTTC > NC_002947/3755509‑3755803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |