Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,340,119 | A→T | 10.2% | intergenic (+60/‑271) | ribAB‑II → / → PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,340,119 | 0 | A | T | 10.2% | 114.1 / 4.0 | 39 | intergenic (+60/‑271) | ribAB‑II/PP_3814 | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base A (16/19); new base T (2/2); total (18/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
CTGGGGCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGC > NC_002947/4339970‑4340268 | cTGGGGCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa < 1:635134/150‑1 (MQ=255) aaTACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGAc < 2:1288391/150‑1 (MQ=255) gcgGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCAtt > 1:658853/1‑150 (MQ=255) aaggtctacgggatatcatattatggtattccaagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCAtt < 2:345600‑M1/56‑1 (MQ=255) aaggtctacgggatatcatattatggtattccaagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCAtt > 1:345600‑M1/93‑148 (MQ=255) aggtctacgggatatcatattatggtattccaagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcgc > 1:458899‑M1/92‑150 (MQ=255) ggCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcgcg < 2:658853/150‑1 (MQ=255) ggCTATGAGCTGGAGGGGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATGGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAAcc < 2:728574/150‑1 (MQ=255) tATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcgc > 2:1234958/1‑138 (MQ=255) tATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTcgc < 1:1234958/138‑1 (MQ=255) caagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATTCGAGGGTGACACCACCGACGCAtt < 1:929121‑M1/56‑1 (MQ=255) caagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATTCGAGGGTGACACCACCGACGCAtt > 2:929121‑M1/62‑117 (MQ=255) caagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa < 2:1468061‑M1/35‑1 (MQ=255) caagattttggcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGa > 1:1468061‑M1/62‑96 (MQ=255) aTCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAgg > 1:1116476/1‑92 (MQ=255) aTCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAgg < 2:1116476/92‑1 (MQ=255) gcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCAtt < 1:1072358‑M1/56‑1 (MQ=255) gcaagaggtatggggcgaccggccatcactccgccctgtcaaaagcaccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCAtt > 2:1072358‑M1/52‑107 (MQ=255) ggatggCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAgg > 2:882075/1‑72 (MQ=255) ggatggCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAgg < 1:882075/72‑1 (MQ=255) tggCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGc < 1:1278971/103‑1 (MQ=255) tggCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGc > 2:1278971/1‑103 (MQ=255) acaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAg < 1:1093899/55‑1 (MQ=255) acaAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAg > 2:1093899/1‑55 (MQ=255) aaGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCCTTTGACAGGGCGGa > 1:23409/1‑123 (MQ=255) aaGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCCTTTGACAGGGCGGa < 2:23409/123‑1 (MQ=255) ccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGACACCACCGAc > 2:1267636‑M1/5‑55 (MQ=255) ccaaGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGTCGGTGACACCACCGAc < 1:1267636‑M1/51‑1 (MQ=255) GCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTc < 2:1158665‑M1/55‑1 (MQ=255) GCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTc > 1:1158665‑M1/1‑55 (MQ=255) TGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTc > 1:899160‑M1/1‑113 (MQ=255) TGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTc < 2:899160‑M1/113‑1 (MQ=255) GCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGata < 1:962898‑M1/150‑1 (MQ=255) GGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATc < 1:728013‑M1/150‑1 (MQ=255) GTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCa < 1:865524‑M1/108‑1 (MQ=255) GTTTACCCGCGAATGCGTCGGTGGTGTCACCCTCGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCa > 2:865524‑M1/1‑108 (MQ=255) GAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGat < 1:937832‑M1/135‑1 (MQ=255) GAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGat > 2:937832‑M1/1‑135 (MQ=255) GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGc < 2:188555‑M1/70‑1 (MQ=255) GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGc > 1:188555‑M1/1‑70 (MQ=255) GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCataa > 2:1349256‑M1/1‑123 (MQ=255) GAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGCAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCataa < 1:1349256‑M1/123‑1 (MQ=255) aGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGa > 2:235459/1‑76 (MQ=255) aGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGa < 1:235459/76‑1 (MQ=255) aGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGc > 2:714489/1‑150 (MQ=255) | CTGGGGCCGCCGCTGAAATACGCGGGGCTGGCGGGCTATGAGCTGGAGGTGGTGCAGAGCATCCCGTTCGACCCGGGGATGGATGGCTGAGAACACACAAGCAATTGATTTAGCGGGGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGAGGGTGACACCACCGACGCATTCGCGGGTAAACCCGCTCCTACAGGGCCCTTGGTGCTTTTGACAGGGCGGAGTGATGGCCGGTCGCCCCATACCTCTTGCCAAAATCTTGGAATACCATAATATGATATCCCGTAGACCTTGAGTCTGC > NC_002947/4339970‑4340268 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |