Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,144,047 | C→T | 6.9% | D108N (GAC→AAC) | PP_4528 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,144,047 | 0 | C | T | 6.9% | 171.8 / 2.8 | 58 | D108N (GAC→AAC) | PP_4528 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (21/33); new base T (2/2); total (23/35) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 |
GTTTTGAACGCTGCACTTGCCAGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACGGGTTTTCAGGTGATC > NC_002947/5143901‑5144188 | gTTTTGAACGCTGCACTTGCCAGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGAt < 2:1603233/150‑1 (MQ=255) tttGAACGCTGCACTTGCCAGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCa < 1:660138/150‑1 (MQ=255) gCACTTGCCAGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCaa < 1:214539/150‑1 (MQ=255) ttGCCAGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAgg < 1:1078783/138‑1 (MQ=255) ttGCCAGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAgg > 2:1078783/1‑138 (MQ=255) gCCAGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGa < 2:698879/150‑1 (MQ=255) gCCAGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGa > 1:1366657/1‑150 (MQ=255) aGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGcc > 1:1081625/1‑150 (MQ=255) aaaCGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCg < 1:1546299/150‑1 (MQ=255) aCGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGt < 2:63045/150‑1 (MQ=255) gACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCa < 2:289215/150‑1 (MQ=255) aCCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAg < 2:1197615/150‑1 (MQ=255) aCCGCAAGCGATCTGGGCCTTCGCAGAAACCCGTTCGAACGTCGGTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAg < 2:316850/150‑1 (MQ=255) ccTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAgg > 1:900290/1‑150 (MQ=255) aaGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGa > 1:816088/1‑150 (MQ=255) aGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGaa < 2:900290/150‑1 (MQ=255) gtgCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGc < 2:816088/150‑1 (MQ=255) gCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCa > 1:332855/1‑150 (MQ=255) ttCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCATCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTTCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCAttt < 1:334700/150‑2 (MQ=255) ttCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGc < 1:262683/145‑1 (MQ=255) ttCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGc > 2:262683/1‑145 (MQ=255) ttCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTg < 2:721308/150‑1 (MQ=255) cGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTTGATCAGGCtcatc < 2:951888/106‑1 (MQ=255) cGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTTGATCAGGCtcatc < 2:951994/106‑1 (MQ=255) cGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTTGATCAGGCtcatc > 1:951888/1‑106 (MQ=255) cGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTTGATCAGGCtcatc > 1:951994/1‑106 (MQ=255) aGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTgccgcc < 2:630923/150‑1 (MQ=255) gAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGccgccg < 2:261108/150‑1 (MQ=255) ccGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCctc > 1:349021/1‑150 (MQ=255) gTTCGCACGTCGTTTCGTCCATCGCATCCGCCTGCTCATCCAGCACCTGGCGCCGGTGCTCGACGCCGGGGATGCGGCTTTCGATCATGCTCATCAAGCGCAAGCCGCGTTCGTTCAGGACGAACTTTTCGCCATTGCCTCCGTCCTCtt > 2:515004/1‑150 (MQ=255) aCGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTc > 1:227069/1‑150 (MQ=255) cGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCaa < 2:227069/150‑1 (MQ=255) gTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAAt < 2:332855/150‑1 (MQ=255) cgcATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATcc < 2:958567/150‑1 (MQ=255) cATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCcgc < 2:1081625/150‑1 (MQ=255) ctGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGaa < 1:11965/150‑1 (MQ=255) cTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCgcgc < 1:419972/142‑1 (MQ=255) cTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCgcgc > 2:419972/1‑142 (MQ=255) tCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTc > 2:1204829/1‑116 (MQ=255) tCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTc < 1:1204829/116‑1 (MQ=255) cAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGt > 1:544038/1‑86 (MQ=255) cAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGt < 2:544038/86‑1 (MQ=255) cAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTc < 2:587274/90‑1 (MQ=255) cAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTc > 1:587274/1‑90 (MQ=255) cACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTc < 2:871640/150‑1 (MQ=255) ccTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCAt > 2:687145/1‑150 (MQ=255) gCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCAc < 1:449437/150‑1 (MQ=255) tCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACgg > 1:404323/1‑150 (MQ=255) ggggATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATa < 1:1113344/129‑1 (MQ=255) ggggATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATa > 2:1113344/1‑129 (MQ=255) ggggATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGGCCTTTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACGGGTTTTCAg < 2:1366657/150‑1 (MQ=255) gctgctGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACGGGTTTTCAGGTGATc > 2:1299151/1‑150 (MQ=255) tgctgTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACgg < 1:845425/134‑1 (MQ=255) tgctgTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACgg > 2:845425/1‑134 (MQ=255) tgctgTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACgg > 1:1398677/1‑134 (MQ=255) tgctgTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACgg < 2:1398677/134‑1 (MQ=255) gTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACGGGTTTTCAg > 2:327159/1‑138 (MQ=255) gTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACGGGTTTTCAg < 1:327159/138‑1 (MQ=255) | GTTTTGAACGCTGCACTTGCCAGCCTTAAAACGACCTCAAGCAATCTGTGCCTTCGCAGAAACCCGTTCGAACGTCGTTTCGTCCAGCGCATCCTCCTGCTCATCCAGCACCTGGCGCGGGTGCTCGAAGCCGGGGATGCTGCTGTCGATCAGGCTCATCAAGCGCGAGCCGCGTTCGGTCAGGACGAAGTTTTCGCCATTGCCGCCGTCCTCTTCAGGTCGGCATTCAATGAATCCGCGCTCGAATAGCAGCTTTTCATACTCGCATGCACGGGTTTTCAGGTGATC > NC_002947/5143901‑5144188 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |