Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 407,414 | A→T | 7.7% | A198A (GCT→GCA) | aceF ← | AceF‑S‑acetyldihydrolipoate |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 407,414 | 0 | A | T | 7.7% | 156.6 / 5.1 | 52 | A198A (GCT→GCA) | aceF | AceF‑S‑acetyldihydrolipoate |
Reads supporting (aligned to +/- strand): ref base A (20/28); new base T (2/2); total (22/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.40e-01 |
CCTGCGTGAACCTTGGCATTGCTGCCAGCGGCCGGTGCGGTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCTTGTCGGACTCCAGGGTAAT > NC_002947/407268‑407557 | ccTGCGTGAACCTTGGCATTGCTGCCAGCGGCCGGTGCGGTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGcc > 1:633961/1‑150 (MQ=255) ccTTGGCATTGCTGCCAGCGGCCGGTGCGGTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCGCAGCCGCGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCAc > 2:1315296/1‑150 (MQ=255) ttGGCATTGCTGCCAGCGGCGGGTGCGGTAGCAGGCGGTACAGGGACAGCAGCGGGGTTGGTAGCGGAAGGTGCGGCAGCCGGAGCATCCTCTGCCTTGACTGGTGCGGGAGCAGCAGACCTTGCCGGCGTCGCAACCTcggcggtaacc < 2:768537/150‑6 (MQ=255) ttGGCATTGCTGCCAGCGGCCGGTGCGGTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCAccc > 2:1058902/1‑150 (MQ=255) gctgcCAGCGGCCGGTGCGGTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGNGCAGCANCCGGTGCCGGCGNGGCAGCCGGGGCGGCACCCGCCACttt < 1:1310727/150‑1 (MQ=255) cAGCGGCCGGTGCGGTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGggc > 2:973293/1‑130 (MQ=255) cAGCGGCCGGTGCGGTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGggc < 1:973293/130‑1 (MQ=255) aGCGGCCGGTGCGGTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCTTCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCtt > 1:834552/1‑150 (MQ=255) ggTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTc < 1:642201/150‑1 (MQ=255) tAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGAAGAATCAGCCTTGGGTCTGGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGc > 1:609142/1‑150 (MQ=255) tAGCAGCCGGTGCAGGAGCTGGAGCCGGGGCTGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTCCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGc < 1:1318947/150‑1 (MQ=255) aGGGGCAGCAGCCGGGGCGGCAGCGGAAGGTACGGTAGCCCGACCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTc < 1:364976/150‑1 (MQ=255) gggCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAgg > 1:145561/1‑131 (MQ=255) gggCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAgg < 2:145561/131‑1 (MQ=255) gggCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGAc > 2:1298312/1‑145 (MQ=255) gggCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGAc < 1:1298312/145‑1 (MQ=255) gggCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGt > 1:1269497/1‑150 (MQ=255) agcCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAg > 2:168751/1‑150 (MQ=255) cGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCtt < 2:1615696/150‑1 (MQ=255) ggggCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTcc > 2:883340/1‑144 (MQ=255) ggggCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTcc < 1:883340/144‑1 (MQ=255) agcggcagGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCAc > 2:1402542/1‑150 (MQ=255) gcggcagGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGCCCCGGCTGCCgcgcc > 1:527597/1‑76 (MQ=38) gcggcagGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGCCCCGGCTGCCgcgcc < 2:527597/80‑5 (MQ=38) gTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGa < 2:1530012/150‑1 (MQ=255) gTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGa > 1:1356169/1‑150 (MQ=255) ggCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCAGGGCCGTGGCCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCAc < 1:920295/150‑1 (MQ=255) cGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATc > 1:838141/1‑91 (MQ=255) cGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATc < 2:838141/91‑1 (MQ=255) agcctcagcctTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCgg < 1:1058902/150‑1 (MQ=255) tcagcctTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGAc > 2:512145/1‑150 (MQ=255) cctTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGa > 1:864076/1‑150 (MQ=255) cctTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGa > 2:815585/1‑150 (MQ=255) cctTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGa < 1:642082/150‑1 (MQ=255) ctTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGAt > 1:1254630/1‑150 (MQ=255) cTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCa < 2:385698/150‑1 (MQ=255) tGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCAt < 2:1269497/150‑1 (MQ=255) gCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAg < 2:609142/150‑1 (MQ=255) gggAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCTCCTGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGTCTTCGTTTTCCAGCTTGCCCAGGACTTCTTGGACCACGGCGGCAGCCGGCGACGGGATTTCCATGGAGGc < 2:1356169/149‑1 (MQ=255) gAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCt > 2:1646036/1‑150 (MQ=255) gcagcagcCGGTGCCGGCGCGGCAGCGGAGTCGTCATCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGCTTTCCATGGAGGCCTTg < 2:834552/150‑1 (MQ=255) gcagcagcCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCTTg < 1:1596604/150‑1 (MQ=255) agcatcCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGAt > 1:463127/1‑57 (MQ=255) agcagcCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGAt < 2:463127/57‑1 (MQ=255) agcagcCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCTTGTc < 1:512145/150‑1 (MQ=255) agcCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGAACACCACTGTTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCTTGTCGGa < 1:199885/150‑1 (MQ=255) gggTGCCGCCCCGGCTGCCGCGCCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAg < 1:807723/135‑1 (MQ=255) gggTGCCGCCCCGGCTGCCGCGCCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAg > 2:807723/2‑136 (MQ=255) cGGTGCTGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCTTGTCGGACTc < 2:633961/150‑1 (MQ=255) gCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCTTGTCGGACTCCAgg < 1:168751/150‑1 (MQ=255) ggCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCTTGTCGGACTCCAGGGTa < 1:815585/150‑1 (MQ=255) cgcgGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCTTGTCGGACTCCAGGGTAAt < 1:1646036/150‑1 (MQ=255) | CCTGCGTGAACCTTGGCATTGCTGCCAGCGGCCGGTGCGGTAGCAGCCGGTGCAGGGGCAGCAGCCGGGGCGGCAGCGGCAGGTGCGGCAGCCGGAGCAGCCTCAGCCTTGGCTGGTGCAGGAGCAGCAGCCGGTGCCGGCGCGGCAGCCGGGGCGGCACCCGCCACTTTCAGCTTGAAGATCAGGTCGCCAGTGCCGACTTCGTCTTCCAGCTTGCACAGCACTTCTTCGACCACGCCGGCAGCCGGCGACGGGATTTCCATGGAGGCCTTGTCGGACTCCAGGGTAAT > NC_002947/407268‑407557 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |