| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2429960 | 42 (0.690) | 11 (0.240) | 11/204 | 3.5 | 30.3% | intergenic (+47/+66) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| ? | NC_002947 | = 2429975 | 19 (0.420) | intergenic (+62/+51) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CGTGAGCCGATGGCTACGCTGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2429788‑2429960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggtgaacccgctcctacaaGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTCGCCTT < NC_002947/2429975‑2429828 CGTGAGCCGATGGCTACGCTGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTT > 2:100663/1‑150 GCCGATGGCTACGCTGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGG < 2:145463/150‑1 TACGCTGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCG > 1:1077154/1‑150 TGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATGCTGGAATAGGTGTGTTGCCGGTGCCGGCCTCTTCGCGGGGGAACTCGCTCCT > 2:1437261/1‑150 TGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCT < 1:857108/150‑1 GAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTA > 2:31642/1‑150 AGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCG > 1:115177/1‑132 AGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCG < 2:115177/132‑1 GCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGA > 2:688720/1‑150 CGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCC > 2:1426645/1‑124 CGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCC < 1:1426645/124‑1 GCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGG < 1:688720/150‑1 CCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA < 1:31642/150‑1 TGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGG < 1:598344/110‑1 TGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGG > 2:598344/1‑110 GATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGT > 2:157360/1‑101 GATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGT < 1:157360/101‑1 TGGAATAGGTGTGTTGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAA > 1:568731/1‑95 TGGAATAGGTGTGTTGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAA < 2:568731/95‑1 TAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGT < 1:606602/69‑1 TAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGT > 2:606602/1‑69 GCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCC > 1:628257/1‑150 CTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCAC > 1:165420/1‑61 CTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCAC < 2:165420/61‑1 TCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGG > 2:867304/1‑150 TCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGG > 2:1352536/1‑150 GTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCG < 2:628257/150‑1 GTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCG > 2:626883/1‑150 GTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCG > 2:1089380/1‑150 GTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCAACCCCACCTCCAGCCCCCCACTGCCATCCACAGCCAGGTTCTGGCCG > 1:100663/1‑150 CCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGC > 1:571953/1‑150 CCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGG < 1:515488/141‑1 CCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGG > 2:515488/1‑141 CGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAG < 1:164561/82‑1 CGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAG > 2:164561/1‑82 TCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGG < 1:344938/62‑1 TCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGG > 2:344938/1‑62 CCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTC < 2:1181948/150‑1 CTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA < 1:1252574/48‑1 CTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA > 2:1252574/1‑48 AAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATGCCTACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTCGCCTT > 2:1404412/1‑150 AAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTCGCCTT > 2:158691/1‑150 AAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTCGCCTT > 1:1350867/1‑150 AAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTCGCCTT > 1:1067941/1‑150 CGTGAGCCGATGGCTACGCTGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2429788‑2429960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggtgaacccgctcctacaaGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTCGCCTT < NC_002947/2429975‑2429828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |