New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 538248034 (0.560)10 (0.220) 10/200 3.7 29.8% intergenic (+52/+81) smpB/pdhR SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
?NC_002947 = 5382508 22 (0.490)intergenic (+80/+53) smpB/pdhR SsrA‑binding protein/DNA‑binding transcriptional regulator LldR
Rejected: Coverage evenness skew score above cutoff.

TGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGA  >  NC_002947/5382364‑5382656
                                                                                                                                                |                                                                                                                                                    
tGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtg                                                                                                                                                 <  1:987950/150‑1 (MQ=255)
 gcgcGAACGCTGTTCTAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGAAAGGAAGAGTAACTTCTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtgt                                                                                                                                                <  2:465886/150‑1 (MQ=39)
  cgcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtgtg                                                                                                                                               <  2:865771/150‑1 (MQ=255)
  cgcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGCGCCCGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCtgtg                                                                                                                                               <  2:589509/150‑1 (MQ=255)
   gcgAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTgg                                                                                                                                              <  2:661218/150‑1 (MQ=255)
         gcgATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCGGCAAGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCgg                                                                                                                                        <  2:588620/150‑1 (MQ=255)
         gcgATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCgg                                                                                                                                        >  1:642725/1‑150 (MQ=255)
         gcgATTCCAACCGCGAGCTGCAGAGGGATGTGCGGCGCGAGGGCAATGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCgg                                                                                                                                        <  2:14263/150‑1 (MQ=39)
               ccAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGc                                                                                                                                  <  1:8809/150‑1 (MQ=255)
               ccAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGc                                                                                                                                  <  1:434042/150‑1 (MQ=255)
                         gCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAagag                                                                                                                        <  2:642725/150‑1 (MQ=255)
                                          ggAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTa                                                                                                                                                      >  2:215452/1‑103 (MQ=255)
                                          ggAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTa                                                                                                                                                      <  1:215452/103‑1 (MQ=255)
                                                       ggAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAaga                                                                                                                         >  1:381308/1‑119 (MQ=255)
                                                       ggAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAaga                                                                                                                         <  2:381308/119‑1 (MQ=255)
                                                                                                  cAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTg                                               >  1:297105/1‑150 (MQ=255)
                                                                                                   aaGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTgc                                              >  1:1164333/1‑150 (MQ=255)
                                                                                                       ccGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCt                                          >  1:97753/1‑150 (MQ=255)
                                                                                                       ccGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCt                                          >  1:1006091/1‑150 (MQ=255)
                                                                                                             ccACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCa                                        >  1:117779/1‑146 (MQ=255)
                                                                                                             ccACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCa                                        <  2:117779/146‑1 (MQ=255)
                                                                                                             ccACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgc                                     >  1:304239/1‑149 (MQ=255)
                                                                                                             ccACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgc                                     <  2:304239/149‑1 (MQ=255)
                                                                                                               acaGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGTGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgcagc                                  <  1:1100805/150‑1 (MQ=255)
                                                                                                               acaGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGTGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATgcagc                                  >  2:1100805/1‑150 (MQ=255)
                                                                                                                   gAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGACCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAcct                              >  2:522332/1‑150 (MQ=255)
                                                                                                                     aTGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCGCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAcctcc                            <  2:1006091/150‑1 (MQ=255)
                                                                                                                     aTGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCAcctcc                            >  1:195944/1‑150 (MQ=255)
                                                                                                                       ggCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTg                          <  2:195944/150‑1 (MQ=255)
                                                                                                                        gCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGc                         >  1:254087/1‑150 (MQ=255)
                                                                                                                          aCCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGcac                       >  2:63265/1‑150 (MQ=255)
                                                                                                                            cAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTGCGTTCGCCTCATGCAGCACCTCCTGCACAt                     >  2:623601/1‑150 (MQ=255)
                                                                                                                                   aaGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATAc                   <  1:777452/145‑1 (MQ=255)
                                                                                                                                   aaGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATAc                   >  2:777452/1‑145 (MQ=255)
                                                                                                                                       ccGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGc          <  1:623601/150‑1 (MQ=255)
                                                                                                                                          gcgcCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCgg       >  1:1101715/1‑150 (MQ=255)
                                                                                                                                               tATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGa  >  2:353513/1‑150 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
TGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGAATGGCACCAGATTCAAGCCCGGCGCCTATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGCCCATAAAAGCCTCAGCGCCCGCTGCGCCGCTCTGCCCGCGCCACCCGCTGGGCTTCTTCGTGCGCCTCATGCAGCACCTCCTGCACATACAAAATGTGCCGGCTGGA  >  NC_002947/5382364‑5382656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.