| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5453186 | 6 (0.100) | 13 (0.330) +CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA |
11/174 | 2.9 | 46.8% | intergenic (+151/‑204) | lnt/PP_4791 | apolipoprotein N‑acyltransferase/transposase |
| ? | NC_002947 | 5545674 = | 40 (0.660) | intergenic (‑766/+111) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
GAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACA > NC_002947/5545575‑5545822 | gAACCATCGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAgg < 2:1164502/150‑1 (MQ=21) cATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGaa > 2:597227/1‑150 (MQ=38) gaaaaagaaaaggcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCtcctacagggcggttta > 1:436783‑M2/92‑143 (MQ=255) gCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGCATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCa < 1:481835/150‑1 (MQ=255) cAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCGTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCaa > 1:1097403/1‑150 (MQ=255) aaaGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGCCAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAAt < 2:1044595/150‑1 (MQ=255) aGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCa < 2:889262/150‑1 (MQ=255) ttCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCt < 2:1349786/150‑1 (MQ=255) aaggcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTgg > 2:366737‑M2/83‑118 (MQ=255) aaggcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTgg < 1:366737‑M2/36‑1 (MQ=255) aggcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCt < 1:1172378‑M2/34‑1 (MQ=255) aggcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCt > 2:1172378‑M2/82‑115 (MQ=255) gcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACa > 1:1068578‑M2/80‑128 (MQ=255) gcggttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACa < 2:1068578‑M2/49‑1 (MQ=255) gcggcTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAg > 2:1344864/1‑150 (MQ=255) ggttggcccggtagggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcatgtttcc > 1:780220‑M2/78‑82 (MQ=255) ggttggcccggtagggccaaccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGc < 2:780220‑M2/7‑1 (MQ=255) gttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCt > 2:943786‑M2/77‑84 (MQ=255) gttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCt < 1:943786‑M2/8‑1 (MQ=255) gttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCtcctgca > 2:1489406‑M2/77‑122 (MQ=255) gttggcccggtagggccagccgccttttctttttcaaaatgtcagcgtcgctgcggaactgaagccgtacacctcaTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCa < 1:1489406‑M2/49‑1 (MQ=255) gACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCgg > 2:736423/1‑150 (MQ=255) aCCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCggg < 2:1136054/150‑1 (MQ=255) cccGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCAc < 2:1466422/150‑1 (MQ=255) gATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCcgc < 1:538840/150‑1 (MQ=255) cAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGaa < 1:1293333/150‑1 (MQ=255) tCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCTGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCTTGTAGGAGCGGGTTCACCCGCGAagag < 1:784938/150‑1 (MQ=255) tCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAagag > 2:1218824/1‑150 (MQ=255) gAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCAc < 2:595894/135‑1 (MQ=255) gAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCAc > 1:595894/1‑135 (MQ=255) aTGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGaa < 1:597227/150‑1 (MQ=255) ttttCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGc > 1:728929/1‑104 (MQ=255) ttttCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGc < 2:728929/104‑1 (MQ=255) tttCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGc < 1:1414985/150‑1 (MQ=255) aGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTgaga < 2:408238/150‑1 (MQ=255) aGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTgaga < 1:799854/150‑1 (MQ=255) tctcGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTc > 1:1446993/1‑150 (MQ=255) ctcGATGTCAGTGCAGATCTGACGTCATGCTTATCCTGTTTTCTGTGCGACAGCGCAGCCCAGAAGGGCTGGGTTATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGTGGGTTTACCTGTGAAGAGGCCGGAACAGGCTGAGAGTCa < 2:688007/150‑1 (MQ=25) ctcGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCa > 2:952585/1‑150 (MQ=255) cGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACAGTTTATGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAgc < 1:1396305/150‑1 (MQ=255) gATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGt < 2:967468/145‑1 (MQ=255) gATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGt > 1:967468/1‑145 (MQ=255) tCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCACGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCtta > 1:335542/1‑149 (MQ=255) cAGTGCAGATCTGACGTCATGCGCATCCTTTTTGCTGTGCGAAAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCGATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGa < 2:1272515/150‑1 (MQ=255) aGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGAc < 2:1465391/150‑1 (MQ=255) gTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCtt < 2:786335/146‑1 (MQ=255) gTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCtt > 1:786335/1‑146 (MQ=255) gTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGAcc > 1:1057044/1‑150 (MQ=255) gACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGc < 2:352940/121‑1 (MQ=255) gACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGc > 1:352940/1‑121 (MQ=255) cTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACa < 2:383307/150‑1 (MQ=255) cTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACa > 1:113936/1‑150 (MQ=255) cTGTTTGCTGTGCGACAGCGCAGACCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGTACGGCTTCGAACa < 1:383004/150‑1 (MQ=255) | GAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACA > NC_002947/5545575‑5545822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |