Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,545,2100AT44.4% ‑0.5 / 19.5 18intergenic (‑302/+575)rpsF/rlmB30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
Reads supporting (aligned to +/- strand):  ref base A (5/5);  new base T (2/6);  total (7/11)
Fisher's exact test for biased strand distribution p-value = 3.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

GATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCT  >  NC_002947/5545061‑5545256
                                                                                                                                                     |                                              
gATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGa                                                >  2:89214/1‑150 (MQ=255)
 aTTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGaa                                               >  2:1247774/1‑150 (MQ=255)
          tatTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGccc                                      <  2:460685/150‑1 (MQ=255)
          tatTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGccc                                      <  1:529657/150‑1 (MQ=255)
           atTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCCAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCCGCCACCAGTTACTACCCCAGTTTCCGGGCTTTGCTTCGCAAAGCCCg                                     <  1:500683/150‑1 (MQ=18)
            tttGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGCCCgg                                    <  2:61522/150‑1 (MQ=255)
             ttGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGccc                                      >  2:1099815/1‑147 (MQ=255)
             ttGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGccc                                      <  1:1099815/147‑1 (MQ=255)
                   aGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGcc                             >  1:862882/1‑150 (MQ=255)
                        gAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTAATCCACTACCATACAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCt                        >  1:184478/1‑150 (MQ=17)
                           aCATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGCCCg                                     <  2:1454333/134‑1 (MQ=255)
                           aCATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGCCCg                                     >  1:1454333/1‑134 (MQ=255)
                           aCATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtgg                     <  2:862882/150‑1 (MQ=255)
                           aCATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtgg                     <  2:168505/150‑1 (MQ=255)
                                       gCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCg         >  1:448510/1‑150 (MQ=38)
                                         tGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGaa       <  2:448510/150‑1 (MQ=35)
                                             ggCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActcc   <  1:89214/150‑1 (MQ=32)
                                              gCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActcct  >  2:116873/1‑150 (MQ=32)
                                                ccTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtggcttctggct            <  2:1261128/138‑1 (MQ=32)
                                                ccTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtggcttctggct            >  1:1261128/1‑138 (MQ=32)
                                                                                                                                                     |                                              
GATTGGTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCT  >  NC_002947/5545061‑5545256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: