| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 181536 | NA (NA) | 38 (0.780) | 13/256 | 3.1 | 44.1% | intergenic (+2/‑131) | PP_23SB/PP_r01 | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_002947 | = 702778 | 50 (0.990) | intergenic (+23/‑109) | PP_23SD/PP_5SD | 23S ribosomal RNA/5S ribosomal RNA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTTGCCTCAAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAgcaat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/181388‑181536‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCAATTAGTATTGGTTAGCTCAACGCCTCACAGCGCTTACACACCCAACCTATCAACGTCGTAGTCTTCGACGGCCCTTTAGGGGATTCAAGATCCCAGTGAGA < NC_002947/702778‑702626 CTTGCCTCAAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAG > 1:903925/1‑150 TTGCCTCAAGATGAGATCTCACTGGGATCTTGAATCCCGTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGC > 2:593899/1‑150 TTGCCTCAAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGC > 2:1241934/1‑150 TTGCCTCAAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGC > 2:536392/1‑150 CCTCAAGATGAGATCTCACTGGGATGTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGGGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACT‑CAAGCAAT > 2:410208/1‑150 CCTCAAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAAT > 1:637169/1‑150 CTCAAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGCAGACTACGACGGTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGGTGAGCTAACCAATACGAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATC > 1:595447/1‑150 CTCAAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATC > 1:1173673/1‑150 TCAAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGAGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCT > 2:54112/1‑150 AAGATGAGATCTCACTGGGATCTTGAATCCTCTAGAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGC > 1:349537/1‑150 AAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGC > 1:1059927/1‑150 CTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTT < 2:637169/150‑1 TGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAG < 2:766828/127‑1 TGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAG > 1:766828/1‑127 GGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTTGG < 2:857989/150‑1 GGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTTGG < 2:119037/150‑1 GGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTTGG < 1:695381/150‑1 TCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTT > 2:774780/1‑144 TCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTT < 1:774780/144‑1 TTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTTGG > 1:1051529/1‑144 TTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTTGG < 2:1051529/144‑1 GAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCT > 2:1266704/1‑124 CCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTTGGGT < 2:571306/138‑1 CCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTTGGGT > 1:571306/1‑138 CCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCT < 1:1088622/133‑1 CCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCT > 2:1088622/1‑133 CCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATC < 1:151609/117‑1 CCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGCTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATC > 2:151609/1‑117 CTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAACAATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAA > 1:168497/1‑150 CTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAACAATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAA < 2:168497/150‑1 TCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTT < 1:727299/122‑1 TCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTT > 2:727299/1‑122 GAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGTCAGCAAATTGCTT < 2:694028/121‑1 GAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGTCAGCAAATTGCTT > 1:694028/1‑121 TACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGTCAGCAAATTGCT < 2:669260/114‑1 TACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGTCAGCAAATTGCT > 1:669260/1‑114 TTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTG < 1:594540/96‑1 TTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGAAGATTG > 2:594540/1‑96 TGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTT > 2:1226532/1‑94 TGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAGCAATCTGCGT‑AGCAGATTGCTT < 1:1226532/94‑1 TGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACCACCA‑CAATCTGCGT‑AGCAGATTGCTTGGGTGTTATA < 1:922206/102‑1 TGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑ACCACAATCTGCGT‑AGCAGATTGCTTGGGTGTTATA > 2:922206/1‑102 AGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAACAATCTGCGT‑AGCAGATTGCTTGGGTGTTATATG > 2:137192/1‑83 AGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAACAATCTGCGT‑AGCAGATTGCTTGGGTGTTATATG < 1:137192/83‑1 TTGCCCGTGAGGCTTGACCATATAACACC‑CAAACAATCTGCGT‑AGCAGATTGCTTGG < 1:932442/57‑1 TTGCCCGTGAGGCTTGACCATATAACACC‑CAAACAATCTGCGT‑AGCAGATTGCTTGG > 2:932442/1‑57 CAATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCAATTAGTATTGGTTAGCTCAACGCCTCACAGCGCTTACACACCCAACCTATCAACGTCGTAGTCTTCGACGGCCCTTTAGGGGATTCAAGATCCCAGTGA < 2:1196637/150‑1 CAATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCAATTAGTATGGGTTAGCTCAACGCCTCACAGCGCTTACACACCCAACCTATCAACGTCGTAGTCTTCGACGGCCCTTTAGGGGATTCAAGATCCCAGTGA < 1:966517/150‑1 AATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCAATTAGTATTGGTTAGCTCAACGCCTCACAGCGCT > 1:851201/1‑84 AATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCAATTAGTATTGGTTAGCTCAACGCCTCACAGCGCT < 2:851201/84‑1 ATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCAATTAGTATTGGTTAGCTCAACGCCTCACAGCGCTTACACACCCAACCTATCAACGTCGTAGTCTTCGACGGCCCTTTAGGGGATTCAAGATCCCAGTGAGA < 1:703591/150‑1 ATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAAGCCTAACGGGCAATTAGTATTGGTTAGCTCAACGCCTCACAGCGCTTACACACCCAACCTATCAACGTCGTAGTCTTCGACGGCCCTTTAGGGGATTCAAGATCCCAGTGAGA < 1:588905/150‑1 CTTGCCTCAAGATGAGATCTCACTGGGATCTTGAATCCCCTAAAGGGCCGTCGAAGACTACGACGTTGATAGGTTGGGTGTGTAAGCGCTGTGAGGCGTTGAGCTAACCAATACTAATTGCCCGTGAGGCTTGACCATATAACACC‑CAAgcaat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/181388‑181536‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATCTGCGT‑AGCAGATTGCTTGGGTGTTATATGGTCAAGCCTCACGGGCAATTAGTATTGGTTAGCTCAACGCCTCACAGCGCTTACACACCCAACCTATCAACGTCGTAGTCTTCGACGGCCCTTTAGGGGATTCAAGATCCCAGTGAGA < NC_002947/702778‑702626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |