Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,648,917 | Δ1 bp | 100% | intergenic (‑154/+142) | oprB‑II ← / ← PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,648,917 | 0 | G | . | 97.0% | 397.3 / 1.7 | 92 | intergenic (‑154/+142) | oprB‑II/PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
Reads supporting (aligned to +/- strand): ref base G (1/1); new base . (50/39); total (52/40) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01 | |||||||||||
Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTTCGTCGCTTGTGGTTCA > NC_002947/1648776‑1649061 | tCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGAtt > 2:2068995/1‑150 (MQ=255) ttttGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAGAACAAATTGTC‑CAGAGGAttgt > 2:1189420/1‑150 (MQ=255) tttGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGAttgtt < 2:794040/150‑1 (MQ=255) gATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGAttgttgtt < 1:2068995/150‑1 (MQ=255) gATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGAttgttgtt > 1:1799586/1‑150 (MQ=255) ttattGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGa > 1:1327795/1‑150 (MQ=255) tattGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGaa > 1:1132316/1‑150 (MQ=255) caaaaaaaCGTCACGAGCATCGAAGGGCGGGCCCCTGAATGGATATGGCGACAAGATTGTTGGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGTAAGTTAGAAGAAAAAAGACAAATTGTC‑CACTGGATTGTGGTTGAACggg < 2:558123/149‑1 (MQ=255) aaaaaaaCGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGc < 2:699893/150‑1 (MQ=255) aaaaaCGGCAAGCGCATCGAAGGGCGGGCCCCTCACTGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATAGGGGGAAGTTATAAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGc < 1:713803/150‑1 (MQ=255) aaaaCGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAAc > 1:2336020/1‑150 (MQ=255) aCGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAgt > 1:1338113/1‑150 (MQ=255) aaGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGACAACTGAGGCGTGTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCa > 2:1736330/1‑150 (MQ=255) gcgcATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGAGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCAtt > 2:755157/1‑150 (MQ=255) cATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAAt > 1:339621/1‑150 (MQ=255) cGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑Ga < 2:2331516/150‑1 (MQ=255) cGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGCC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑Ga < 1:260897/150‑1 (MQ=255) aaGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAgt > 2:721033/1‑149 (MQ=255) aaGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAgg > 2:2306264/1‑150 (MQ=255) aaGGGCGGGCCCCCAAATGGATATGGCGAGAAGATTGTCAGAGGAAGCTTTTCAGCTTGCGGCGGGGAGGATATA‑TGGGAAGTTATAACAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAgg < 1:22058/150‑1 (MQ=255) ggcgggcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACg < 1:1854487/123‑1 (MQ=255) ggcgggcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACg > 2:1854487/1‑123 (MQ=255) ggcgggcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAg > 2:824104/1‑150 (MQ=255) ggcgggcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAg > 2:1203523/1‑150 (MQ=255) ggcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGgtgt < 1:2306264/150‑1 (MQ=255) ggcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGgtgt < 1:2296313/150‑1 (MQ=255) cccTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGc < 2:1013009/119‑1 (MQ=255) cccTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGc > 1:1013009/1‑119 (MQ=255) cccTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAgg > 1:1762571/1‑150 (MQ=255) cTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAACAAGACGGATGGGC‑CGGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑CAGGCAGGTGTAGGAg > 2:72150/1‑150 (MQ=255) cTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACgg < 2:1203866/115‑1 (MQ=255) cTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACgg > 1:1203866/1‑115 (MQ=255) tcggaggATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGT‑ACAGAGGATTGTTGTTGAACGGGCCACAGTCGGCATTAATC‑‑GAGGCAGGTGTAGGAGc > 1:672040/6‑150 (MQ=255) tCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGgtgt > 1:2004037/1‑144 (MQ=255) tCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGgtgt < 2:2004037/144‑1 (MQ=255) tCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGc < 1:1128505/150‑1 (MQ=255) tCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGc < 2:1762571/150‑1 (MQ=255) aaTGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCgg > 1:1281495/1‑150 (MQ=255) aaTGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCgg < 2:1327795/150‑1 (MQ=255) aaTGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCgg > 1:78724/1‑150 (MQ=255) aTGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCggg > 2:866001/1‑150 (MQ=255) tGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTAGAAGGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGt > 1:2006769/1‑150 (MQ=255) tatGGGGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCAc > 2:271254/1‑150 (MQ=255) tGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCAccc > 1:173991/1‑150 (MQ=255) ggCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAgtcgtc > 1:1682152/1‑115 (MQ=255) ggCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAgtcgtc < 2:1682152/115‑1 (MQ=255) ggCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCcg > 1:1153533/1‑150 (MQ=255) gCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCcgc < 2:2336020/150‑1 (MQ=255) gCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCcgc > 1:439425/1‑150 (MQ=255) gACAAGATTGTTCGATGAAGGGTTTCAGCTTGCGGCGGGGAGGATATAGGGGGAAGTTATAAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCcgc > 2:96785/1‑150 (MQ=255) gTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCgg > 2:1383658/1‑150 (MQ=255) ttCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCggg < 2:874965/129‑1 (MQ=255) ttCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCggg > 1:874965/1‑129 (MQ=255) ttCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGt < 2:78724/150‑1 (MQ=255) gATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGGCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTGCCACCGCGACTGCGCCGGGTga > 2:1731864/1‑149 (MQ=255) gAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCt > 1:1761497/1‑150 (MQ=255) aGCGTTTCAGCTTACGGCGGGGAGGAAATG‑GGGGAAGTGATAAGAAAAAAGACAAATTGGC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTAc > 2:89338/1‑150 (MQ=255) gCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTGGAATGGCATCCAG‑CGT‑GTTGCTCAGGCGGTACGGGTAGGAGCGGGTTCACCCGCGAATGCGCTGGGGGCCCTAcc > 1:2026671/1‑150 (MQ=255) tttCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATc < 2:1992286/150‑1 (MQ=255) aGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTAt < 2:339621/150‑1 (MQ=255) cTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTc > 1:446781/1‑150 (MQ=255) ttGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGc < 1:2097390/107‑1 (MQ=255) ttGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGc > 2:2097390/1‑107 (MQ=255) cggcggGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCgg < 1:1580048/150‑1 (MQ=255) gaggaTATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAAcc > 1:996927/1‑150 (MQ=255) gaggaTATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAAcc > 2:2104266/1‑150 (MQ=255) gaggaTATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAAcc > 2:406824/1‑150 (MQ=255) gaTATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGt < 2:1281495/150‑1 (MQ=255) atatA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGtt < 2:1799586/150‑1 (MQ=255) tata‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTc < 1:1736330/150‑1 (MQ=255) tata‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTc < 2:238733/150‑1 (MQ=255) tata‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTc > 2:433131/1‑150 (MQ=255) ata‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTcc < 2:1761497/150‑1 (MQ=255) a‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTc > 2:765823/1‑147 (MQ=255) a‑GGGGAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTc < 1:765823/147‑1 (MQ=255) ggAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTacac < 1:1122793/150‑1 (MQ=255) gAAGTTATAAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGGTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCATTCCTACAcc > 2:1886515/1‑150 (MQ=255) tataAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAgtc < 2:1961291/53‑1 (MQ=255) tataAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAgtc > 1:1961291/1‑53 (MQ=255) taAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGTTAGACGCGGTGGGGCTACCATCGTATTCGCGGGTGAACCCGTGCCTACACCGATCTtc < 2:1153533/150‑1 (MQ=255) taAGAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTtc > 2:2174096/1‑150 (MQ=255) aaaGAAAAAAGACAACTTGTC‑TAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GCGGCGGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTtc < 2:439425/149‑1 (MQ=39) gAAAAAAGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTtcgtc > 2:203148/1‑150 (MQ=255) aaaGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTTCGTCGCtt < 1:824104/150‑1 (MQ=255) aaaGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTTCGTCGCtt < 1:1203523/150‑1 (MQ=255) aGACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTTCGTCGCTtgt > 1:791598/1‑150 (MQ=255) gACAAATTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTTCGTCGCTtgtg > 1:206882/1‑150 (MQ=255) aaaTTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTtc < 1:2015575/137‑1 (MQ=255) aaaTTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTtc > 2:2015575/1‑137 (MQ=255) aaaTTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTTCGTCGCTTGTGGt > 2:817419/1‑149 (MQ=255) aaaTTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTTCGTCGCTTGTGGt < 1:817419/149‑1 (MQ=255) aTTGTC‑CAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTTCGTCGCTTGTGGTTCa < 1:203148/150‑1 (MQ=255) | TCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCGGCGGGGAGGATATA‑GGGGAAGTTATAAGAAAAAAGACAAATTGTCGCAGAGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATC‑‑GAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATCTTCGTCGCTTGTGGTTCA > NC_002947/1648776‑1649061 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |