| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,500,681 | Δ1 bp | 7.2% | coding (831/891 nt) | PP_2194 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,500,681 | 0 | T | . | 7.2% | 341.1 / 20.7 | 111 | coding (831/891 nt) | PP_2194 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (52/51); new base . (4/4); total (56/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.77e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
CGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAGCACGCTTTC > NC_002947/2500532‑2500830 | cGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCtgt < 1:296770/150‑1 (MQ=255) aTCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGcc < 1:1665223/150‑1 (MQ=255) tCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGccc > 1:1329326/1‑150 (MQ=255) tATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGAGGGGGCCTGAACGGGCATGTTCAGGCAAACGCCGCCAGCAAATCATGCGCAAATACATGGGCTGAATCGCAAACCCCCTGTGCCCGATg > 2:605768/1‑150 (MQ=255) tGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGcc > 2:1282498/1‑150 (MQ=255) aCTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg < 1:1421537/150‑1 (MQ=255) tACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCATGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGca > 1:1928285/1‑149 (MQ=255) aGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAgg < 2:694832/150‑1 (MQ=255) ggggCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAANTACATAGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAggg < 1:495242/150‑1 (MQ=255) cGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGaa < 2:743703/150‑1 (MQ=255) cGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCATGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggggtt < 2:1928285/150‑5 (MQ=255) gggCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTTAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACgg < 1:2276886/150‑1 (MQ=255) ggCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGc < 2:973706/150‑1 (MQ=255) gCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCa > 2:224280/1‑150 (MQ=255) gCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCa < 1:56330/150‑1 (MQ=255) gCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCaa > 1:690990/1‑150 (MQ=255) cTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAg < 1:808190/150‑1 (MQ=255) tGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAgg < 1:674277/150‑1 (MQ=255) ggAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAggg < 1:1282498/150‑1 (MQ=255) ggAGCATGGCTTACTGATTGTGGTCGACTGCACGAGAACACTAACGGAAACTCCCCCAGCAAATCCTGCGCACATTCAGGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAggg < 1:2270864/150‑1 (MQ=255) aTGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCGAGCTCAGGGTCCAg < 2:95153/150‑1 (MQ=255) ggCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCAcc > 1:1520771/1‑125 (MQ=255) ttACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGcacag > 2:1461578/1‑105 (MQ=255) ttACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGcacag < 1:1461578/109‑5 (MQ=255) tACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCa > 1:1214816/1‑150 (MQ=255) gATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAAc < 2:2035920/150‑1 (MQ=255) gATTGTGGTGGCCTGAACGGGCCTGTTCAGGAAAACGCGGCAAGCACCTGTTGGCGAAAGACAGGGGCGGCCGCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAAc > 1:43892/1‑150 (MQ=255) ttGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAg > 1:857398/1‑150 (MQ=255) tggtggCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGccc > 1:1237310/1‑150 (MQ=255) gtggCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCGTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCt > 2:2219343/1‑150 (MQ=255) gtggCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGCGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGc < 1:76859/146‑1 (MQ=255) gtggCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGCGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGc > 2:76859/1‑146 (MQ=255) gCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCgg > 1:870102/1‑150 (MQ=255) gCCTGAACGGGCCTGTTCAGGCAAACGCAGCCAGAAAATCATGCGCAAATACATGGGGTGCTTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCgg > 2:795690/1‑150 (MQ=255) gCCTGAACAGGCCCGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCTAGCGCCCATAACAGCCCCTCgg > 2:786901/1‑150 (MQ=255) cTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAgg > 2:641838/1‑93 (MQ=255) cTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAgg < 1:641838/93‑1 (MQ=255) cTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGcc > 2:1061161/1‑150 (MQ=255) cTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGcc > 1:1362275/1‑150 (MQ=255) gAACTGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACACGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAAAGGCAACGCAATATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGGCTc < 1:605768/150‑1 (MQ=255) aaCGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTcc < 2:2094142/150‑1 (MQ=255) gggCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAg > 2:1620422/1‑150 (MQ=255) ccTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAg < 1:1671401/107‑1 (MQ=255) ccTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAg > 2:1671401/1‑107 (MQ=255) tGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCtg < 1:1208996/150‑1 (MQ=255) gTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg < 2:882841/75‑1 (MQ=255) gTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCgg > 1:882841/1‑75 (MQ=255) gTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTCCCCGGTGCCGGGC‑CAGGGTGAACGCCACCGCAAAATCAAGCTCATGCACCAGGGCCCATAACACCCCCGCTGCCCCCCCGGCCtgt > 2:1106917/1‑150 (MQ=255) gTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggg > 2:1422739/1‑82 (MQ=37) gTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggg < 1:1422739/83‑2 (MQ=37) tttaGGCAAACGCCGCCCGTAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCtgtg > 2:93314/4‑150 (MQ=255) ttCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCtgt < 2:661716/149‑1 (MQ=255) ttCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCtgt > 1:661716/1‑149 (MQ=255) ggCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGcaca > 2:1436792/1‑150 (MQ=255) gCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa < 1:1201019/119‑1 (MQ=255) gCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa > 2:1201019/1‑119 (MQ=255) gCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACaa > 2:1446161/1‑150 (MQ=255) gCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑AAGGGTGAACGGCAc > 1:2194563/1‑86 (MQ=255) gCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑AAGGGTGAACGGCAc < 2:2194563/86‑1 (MQ=255) aaaCGCCGCCAGCAACTCCGGCGCAAATACGTGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACCGCACCGCAAAATCAACCTCAGGGTCCAGCGCCCATAACAGGCCCTCGGCCTACCAGGCCTGTGCACAatg < 1:866220/150‑1 (MQ=255) aaaCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa > 2:1087512/1‑117 (MQ=255) aaaCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATaa < 1:1087512/117‑1 (MQ=255) aaaCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggg > 2:1772034/1‑74 (MQ=25) aaaCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTG‑GCCCGGCACCGGGCACAgggg < 1:1772034/75‑2 (MQ=25) aCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGt < 1:211981/102‑1 (MQ=255) aCGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGt > 2:211981/1‑102 (MQ=255) gccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAgg > 2:742850/1‑66 (MQ=255) gccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAgg < 1:742850/66‑1 (MQ=255) ccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGc > 2:1478403/1‑113 (MQ=255) ccAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGc < 1:1478403/113‑1 (MQ=255) cAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCaa < 2:690990/150‑1 (MQ=255) cAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCaa < 2:870102/150‑1 (MQ=255) aaaTCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAg > 1:894423/1‑150 (MQ=255) aaaTCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAg > 2:1062359/1‑150 (MQ=255) aaTCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAg < 2:2276941/149‑1 (MQ=255) aaTCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAg > 1:2276941/1‑149 (MQ=255) ccTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAAAGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCaa < 2:2148414/150‑1 (MQ=255) tGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggcatgg > 1:354863/1‑137 (MQ=255) tGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggcatgg < 2:354863/137‑1 (MQ=255) aaaTACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATAtgctg < 2:1237310/150‑1 (MQ=255) aaTACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATAtgctgc > 2:961335/1‑150 (MQ=255) tACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGccc < 1:1436792/150‑1 (MQ=255) aCATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCca < 2:857398/150‑1 (MQ=255) aTGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCcaga > 1:472256/1‑150 (MQ=255) gCTGTCTAGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCcagacaga < 2:1071656/150‑1 (MQ=255) gCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCcagacaga > 1:96975/1‑150 (MQ=255) ccTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGa > 2:1199228/1‑150 (MQ=255) ccTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGa > 1:2211452/1‑150 (MQ=255) ccTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGa > 2:1957975/1‑150 (MQ=255) ccAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTc < 1:2219343/150‑1 (MQ=255) ccAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTc < 1:224280/150‑1 (MQ=255) cAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGt > 2:578429/1‑117 (MQ=255) aaCCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAg < 2:43892/150‑1 (MQ=255) ccccTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAAc > 1:1833808/1‑142 (MQ=255) ccccTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAAc < 2:1833808/142‑1 (MQ=255) cccTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAGCACg > 1:1654538/1‑150 (MQ=255) ccTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggcat > 2:515451/1‑104 (MQ=255) ccTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAatggcat < 1:515451/104‑1 (MQ=255) gtgCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAGCACGCttt < 2:1005481/150‑1 (MQ=255) tgCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAGCACGCTTTc > 1:1297513/1‑150 (MQ=255) | CGTATCTGTATGACTACCAGGGGCGTGGGCGGACCTATACGCTGAGCTGGAGCATGGCTTACTGATTGTGGTGGCCTGAACGGGCCTGTTCAGGCAAACGCCGCCAGCAAATCCTGCGCAAATACATGGGCTGCCTCGCCAACCCCCTGTGCCCGGTGCCGGGC‑CAGGGTGAACGGCACCGCAAAATCAAGCTCAGGGTCCAGCGCCCATAACAGCCCCTCGGCCTCCCAGGCCTGTGCACAATGGCATGGCAAGTAGCCAATATGCTGCCCAGACAGAATGAACGTCAGCACGCTTTC > NC_002947/2500532‑2500830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |