Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,336,791 | Δ1 bp | 6.9% | coding (193/1443 nt) | PP_4696 → | nitrogen regulation protein NR(I) |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,336,791 | 0 | A | . | 6.9% | 311.4 / 17.2 | 101 | coding (193/1443 nt) | PP_4696 | nitrogen regulation protein NR(I) |
Reads supporting (aligned to +/- strand): ref base A (47/46); new base . (3/4); total (50/51) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.15e-01 |
Only 100 of 103 total aligned reads displayed.
GCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGCGT > NC_002947/5336644‑5336940 | gCCCTGCGTCCCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAg < 2:1110396/150‑1 (MQ=255) ccTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCt > 1:94877/1‑150 (MQ=255) gCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAgg < 1:2147102/150‑1 (MQ=255) ccTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAggg < 2:1103470/150‑1 (MQ=255) ccTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAggg > 2:1992379/1‑150 (MQ=255) ccTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAggg < 2:2013036/150‑1 (MQ=255) cTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAggg > 1:728666/1‑149 (MQ=255) cTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAggg < 2:728666/149‑1 (MQ=255) gAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCt > 1:796068/1‑150 (MQ=255) aCCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGa < 1:433410/150‑1 (MQ=255) cAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATc > 2:944205/1‑150 (MQ=255) gaaCCAGGTTAGGGAGGCCGCCCCGGTGCAGGAAGCCGAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCAt < 2:504630/148‑1 (MQ=255) cGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGGCCAGTTACGc < 2:796068/150‑1 (MQ=255) cGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGc < 2:1916342/150‑1 (MQ=255) ggCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTg > 1:1659409/1‑150 (MQ=255) gTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCa > 1:2002370/1‑150 (MQ=255) gCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGc < 1:1866020/150‑1 (MQ=255) gAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTg > 1:2054651/1‑111 (MQ=255) gAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTg < 2:2054651/111‑1 (MQ=255) gAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg < 1:1992379/150‑1 (MQ=255) gAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCGGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg > 1:1589200/1‑150 (MQ=255) cccAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCGCCGAGCTTGATC‑AGCTCggtgcc < 2:237356/95‑5 (MQ=255) cccAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCGCCGAGCTTGATC‑AGCTCggtgcc > 1:237356/1‑91 (MQ=255) ccAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTCCGCCAGCCTGCGCTCAGCGGTGGGCTc > 1:1543279/1‑150 (MQ=255) aGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGa < 2:94877/150‑1 (MQ=255) aGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGa > 1:1805253/1‑150 (MQ=255) cTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAAt < 2:1805253/150‑1 (MQ=255) cTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAAt < 1:944205/150‑1 (MQ=255) cTTCAGCATTGCCACTTTCGACCGCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGTCACCGAGC‑TGATCGAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAAt < 2:666295/150‑1 (MQ=255) ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATAAAGCTCGGC‑CAGGGCACACCGGTGCTGATGATGAGCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATg > 1:523673/1‑150 (MQ=255) aTTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGcgcg > 1:1076760/1‑150 (MQ=255) ttGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAgg < 2:784988/78‑1 (MQ=255) ttGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAgg > 1:784988/1‑78 (MQ=255) gCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg < 2:1052007/150‑1 (MQ=255) ccACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCa < 1:955166/99‑1 (MQ=255) ccACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGACTGTAATCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTgg > 1:1778580/1‑150 (MQ=255) cACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAg < 2:128415/73‑1 (MQ=255) cACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAg > 1:128415/1‑73 (MQ=255) cACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGt < 1:355344/147‑1 (MQ=255) cACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGt > 2:355344/1‑147 (MQ=255) cACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGa > 2:43516/1‑150 (MQ=255) cACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGa > 2:31598/1‑150 (MQ=255) aCTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCa > 2:594886/1‑106 (MQ=255) aCTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCa < 1:594886/106‑1 (MQ=255) aCTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGCGGAc < 2:1358295/150‑1 (MQ=255) cTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACt < 1:31598/150‑1 (MQ=255) tttCGACCTAATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTa > 1:1282433/1‑150 (MQ=255) aCCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCg > 1:1475229/1‑150 (MQ=255) cTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGcc > 1:2093890/1‑150 (MQ=255) tCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGa > 1:1780331/1‑84 (MQ=255) tCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGa < 2:1780331/84‑1 (MQ=255) cATCGTCAGCGACCTGCGCCTGCCCGGCACGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCaa > 2:1915889/1‑150 (MQ=255) aTCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGAGCGAGGTAGACTATATCTCCaaa > 2:2249128/1‑149 (MQ=255) tCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGc < 2:1282433/150‑1 (MQ=255) tCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGccc < 1:1670694/149‑1 (MQ=255) tCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGccc > 2:1670694/1‑149 (MQ=255) tCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGccc > 1:809315/1‑149 (MQ=255) tCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGccc < 2:809315/149‑1 (MQ=255) tCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCt > 1:2152377/1‑150 (MQ=255) tCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCt > 2:1570476/1‑150 (MQ=255) gACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGAc < 1:1611924/150‑1 (MQ=255) aCCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGAcc > 1:1489101/1‑150 (MQ=255) cTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGAt < 2:1772990/65‑1 (MQ=255) cTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGAt > 1:1772990/1‑65 (MQ=255) cTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGACCACGGTCGCGGTGGACTACATCGCCAAGCCCTTCGACCac > 2:776667/1‑150 (MQ=255) gcgcCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCacga < 2:567256/150‑1 (MQ=255) gcgcCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCacga > 1:464913/1‑150 (MQ=255) ccTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGa < 2:1223520/101‑1 (MQ=255) ccTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGa > 1:1223520/1‑101 (MQ=255) tGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTAc > 1:2204588/1‑71 (MQ=255) tGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTAc < 2:2204588/71‑1 (MQ=255) tGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGa > 2:1582746/1‑118 (MQ=255) tGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGa < 1:1582746/118‑1 (MQ=255) gCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGAt < 2:1770777/150‑1 (MQ=255) cccGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACTCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGATTACATCGCCAAGCCCTTCGACCACGACGAGAtg < 1:776667/150‑1 (MQ=255) ccGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg < 1:711517/89‑1 (MQ=255) ccGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg > 2:711517/1‑89 (MQ=255) ccGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGAtgc > 1:1763091/1‑150 (MQ=255) ggCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGAtgctg < 2:252086/150‑1 (MQ=255) cccGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTgcaggca < 1:813967/150‑1 (MQ=255) ccGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTgcaggcag > 2:936599/1‑150 (MQ=255) ggCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGGCTGCGCTCAGCGGCCGCCTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACTACGAGATGCTGCAGGCAGTa < 1:1915889/150‑1 (MQ=255) ctggccGAGCTTGATC‑AGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCAcgacga < 1:1992776/130‑1 (MQ=255) ctggccGAGCTTGATC‑AGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCAcgacga > 2:1992776/5‑134 (MQ=255) ccGAGCTTGATC‑AGCTCGGTGCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGt < 1:1208055/74‑1 (MQ=25) cGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGcc > 1:191628/1‑109 (MQ=255) cGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGcc < 2:191628/109‑1 (MQ=255) aGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTa < 1:849378/100‑1 (MQ=255) aGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTa > 2:849378/1‑100 (MQ=255) aGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTa < 2:1589200/150‑1 (MQ=255) aGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCACTTACGCCAGCCTGCGCTCAGCGGTGGACTCCGTGAAAATCGGCGCGGTGCGTCGCTGCCCTGAGCGGTGCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTa < 1:43516/150‑1 (MQ=255) gcttGATC‑AGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTc > 2:1334448/4‑115 (MQ=255) gcttGATC‑AGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGATAAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTc < 1:1334448/112‑1 (MQ=255) gATCAAGCTCGGC‑CAGGGCACCCCGGTGCTTATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCCAGCACTTCGACCACGACGAGATGGTGCAGGCAGTAGCGCTTATTCt > 1:1132652/1‑150 (MQ=255) aTCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACgaga < 2:1698145/124‑1 (MQ=255) aTCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACgaga > 1:1698145/1‑124 (MQ=255) aTCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTg > 2:1056320/1‑150 (MQ=255) cAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGCg < 1:2249128/150‑1 (MQ=255) aaGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTCTTGTGCGt > 1:347778/1‑150 (MQ=255) aaGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGAGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTACCGCGTATTCTGGGt > 2:171783/1‑150 (MQ=255) | GCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGC‑CAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGCGT > NC_002947/5336644‑5336940 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |