| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,458,946 | Δ1 bp | 6.7% | intergenic (+23/‑39) | leuS → / → PP_4795 | leucine‑‑tRNA ligase/lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,458,946 | 0 | T | . | 6.7% | 268.7 / 13.8 | 89 | intergenic (+23/‑39) | leuS/PP_4795 | leucine‑‑tRNA ligase/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (42/41); new base . (2/4); total (44/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.33e-01 | |||||||||||
GCCAGCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGAAGGA > NC_002947/5458798‑5459085 | gCCAGCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGAtt < 1:2047505/150‑1 (MQ=255) cAGCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGc > 1:1057855/1‑150 (MQ=255) gCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCg‑g > 2:1139795/1‑150 (MQ=255) cgcgAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATCGCCTGACCATCCGCAAGGTCACCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATTAAAACGCCCACCCGC‑ATCGATTGCG‑GGt < 2:94881/150‑1 (MQ=255) gcgAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGCAATCGA‑TGCG‑GGTg < 1:2087331/150‑1 (MQ=255) gcgAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTg < 2:936723/150‑1 (MQ=255) cgacgaAGTCGAAGGCGCGGACAGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGATCTTCCGCAAGTTTATCGTGGTACCGGCCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑TTCGATTGCG‑GGTgg < 2:786094/150‑1 (MQ=255) cgAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGCAATCGA‑TGCG‑GGTgg < 1:86491/150‑1 (MQ=255) agaagTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCg < 1:390291/150‑1 (MQ=255) gTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAAc > 1:1462236/1‑150 (MQ=255) gAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAgg > 1:352265/1‑150 (MQ=255) gAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAgg < 1:824356/150‑1 (MQ=255) ccGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGccc > 2:1429613/1‑149 (MQ=255) ccGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGccc < 1:1429613/149‑1 (MQ=255) ccGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCa > 1:2084980/1‑150 (MQ=255) tGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAg < 1:2189017/150‑1 (MQ=255) gCCCGCAGCAACGAGAATGTCATGAGCTACATCTATGGCCTGACCATCCGCAATGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAgg < 2:1775943/150‑1 (MQ=255) cccgttgcaACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAggg > 2:1203776/7‑150 (MQ=255) cccGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAggg > 1:2192815/1‑150 (MQ=255) ccGCAGCAACGAGAATGTCCTGCGCTTCATTGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGTGCAAGCTGGTCAACATCGTAGCCAACTGATGACAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGa < 1:2293486/150‑1 (MQ=255) gcaACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGcaac < 2:606931/150‑1 (MQ=255) aaCGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCg < 2:1516387/125‑1 (MQ=255) aaCGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCg > 1:1516387/1‑125 (MQ=255) aCGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCaacaac > 1:616057/1‑150 (MQ=255) gagaATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCTGCGCCAACTGATGAACACGCCCCCCCGC‑AGCTATCGCG‑GTTCGGCGGAACAGGCCCAAAAGGGAGCAACAACAt > 1:2271466/1‑150 (MQ=255) gagaATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGGCGCCAACTGATGACCACGATACTCTGC‑‑GGGATGACGTGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACAt > 1:2271834/1‑150 (MQ=255) gaATGTCCTGCGCTTCATCGATGGCCTGACGATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTACG‑GGTGGGAAGAACAGGCCCCAAAGGGAGAAACAAGAtcg > 2:403291/1‑148 (MQ=255) gTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCaa < 1:596103/150‑1 (MQ=255) tCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCaaa > 1:1662432/1‑150 (MQ=255) tCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATAAAAACGCCCAACCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCaaa < 1:939584/150‑1 (MQ=255) cTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACg < 2:616057/150‑1 (MQ=255) tGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCaaa > 2:673388/1‑147 (MQ=255) tGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCaaa < 1:673388/147‑1 (MQ=255) cgcTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCaa < 1:2050259/150‑1 (MQ=255) ttCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAAttt > 1:1003073/1‑150 (MQ=255) ttCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAAttt > 1:2258468/1‑150 (MQ=255) tCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTg < 1:1100662/150‑1 (MQ=255) tCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATAGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTg > 2:207096/1‑150 (MQ=255) gATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGt > 2:1247941/1‑150 (MQ=255) aCCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAg > 2:90751/1‑111 (MQ=255) aCCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAg < 1:90751/111‑1 (MQ=255) ccATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTg > 2:1953356/1‑150 (MQ=255) aTCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGc > 1:1987082/1‑150 (MQ=255) cAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCa < 2:1987082/150‑1 (MQ=255) aGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATg < 1:207096/150‑1 (MQ=255) aGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATg < 2:442377/150‑1 (MQ=255) cATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGCACTGGCGGTCATGCTCa < 1:1247941/150‑1 (MQ=255) tCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAgc < 2:1003073/150‑1 (MQ=255) gTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACAGGATCAAACGCAATTTGCTGGTAATCGGGCTGGCGGTCATGCTCAgcgc > 1:596069/1‑150 (MQ=255) ggTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTgg < 2:171225/69‑1 (MQ=255) ggTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTgg > 1:171225/1‑69 (MQ=255) gTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGAtt < 2:1533964/60‑1 (MQ=255) gTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGAtt > 1:1533964/1‑60 (MQ=255) cGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGt < 2:2258468/150‑1 (MQ=255) gggCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGtt > 1:945623/1‑150 (MQ=255) gCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTc < 2:2192815/150‑1 (MQ=255) aaGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCa < 2:352265/150‑1 (MQ=255) gCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAACAGGGTTCAACAACATGATCAAACGCCCTTTGCTACGCATCGGCCTTTCGATCATGCTCAGCGCCTGCGGTTTCCAGc > 1:2270332/1‑150 (MQ=255) gCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGc > 2:1984856/1‑150 (MQ=255) tGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTg > 1:2245693/1‑150 (MQ=255) gTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCt < 1:76132/102‑1 (MQ=255) gTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCt > 2:76132/1‑102 (MQ=255) gTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTgcg > 1:789557/1‑150 (MQ=255) aaCATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGTCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCgg > 2:774131/1‑150 (MQ=255) aaCATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAgc < 2:1379685/127‑1 (MQ=255) aaCATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAgc > 1:1379685/1‑127 (MQ=255) cATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCa > 2:811320/1‑150 (MQ=255) aTCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGctg < 2:1057855/150‑3 (MQ=255) tcgtcgCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCTCGGCAcc > 2:795334/1‑150 (MQ=255) tcgtcgCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGAN‑GGTGGGCGTAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCAcc > 1:1343294/1‑150 (MQ=255) cgcctccAACTGCCGAAAGCCCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCg < 2:1662432/145‑1 (MQ=255) gtcgCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCgg > 2:1923257/1‑150 (MQ=255) tcgCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGTAACAGGCCCAAAAGTGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCTGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGgc < 1:1139795/150‑1 (MQ=255) gCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGgcgc < 2:789557/150‑1 (MQ=255) gCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGgcgc > 1:273296/1‑150 (MQ=255) ccAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGc > 1:2337882/1‑99 (MQ=255) ccAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGc < 2:2337882/99‑1 (MQ=255) ccAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGAGCCTGCGGTTTCCAGCTGAGAGGCACAGGCGcc > 1:1731662/1‑150 (MQ=255) aaCTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCAc > 1:421847/1‑150 (MQ=255) cTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGTCACCg > 1:1725550/1‑150 (MQ=255) tgatgaAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGa > 1:1654561/1‑150 (MQ=255) atgaAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGTCACCGAGc < 2:1725550/150‑1 (MQ=255) atgaAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGc < 2:945623/150‑1 (MQ=255) tgaAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCt < 1:1953356/150‑1 (MQ=255) aaCGCCCACCCTC‑ACCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGTGAGCAACAACATGATCAAACGCAATTTGCTGTTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGTGGCACCGGCGCCACCGAGCTGAGc < 2:15158/150‑1 (MQ=255) gCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTg < 1:811320/150‑1 (MQ=255) cccACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGa < 2:2084980/150‑1 (MQ=255) ccACCCGCAATCGA‑TGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACAt > 2:2316451/1‑54 (MQ=21) ccACCCGCAATCGA‑TGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACAt < 1:2316451/54‑1 (MQ=21) ccACCCGCAATCGA‑TGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCg > 1:1601010/1‑88 (MQ=38) ccACCCGCAATCGA‑TGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCg < 2:1601010/88‑1 (MQ=38) cccGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGAAGGa < 2:2245693/150‑1 (MQ=255) | GCCAGCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCGC‑ATCGATTGCG‑GGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGAAGGA > NC_002947/5458798‑5459085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |