New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 4265066 (0.750)4 (0.050) 4/234 NT 6.2% coding (594/1026 nt) PP_0039 hypothetical protein
?NC_002947 = 42663 59 (0.710)coding (607/1026 nt) PP_0039 hypothetical protein

ATCGCTGCTGGTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/42495‑42650
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcgTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTGGGAG  <  NC_002947/42663‑42517
                                                                                                                                                                                                                                                                                                                
ATCGCTGCTGGTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCAT                                                                                                                                                            <  2:1831020/150‑1
    CTGCTGGTATCGAGACCTCGCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATG                                                                                                                                                        <  2:60277/150‑1
     TGCTGGTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGC                                                                                                                                                       >  1:1358270/1‑150
       CTGGTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCACTGGGTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCag                                                                                                                                                     >  1:60277/1‑148
               GCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATC                                                                                                                                                           <  1:1173069/136‑1
               GCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATC                                                                                                                                                           >  2:1173069/1‑136
                                                                                                           CCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGTC‑GCTGGAGCCGTCGCATGATG                                                                                                                               >  1:1865109/1‑71
                                                                                                           CCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCGTC‑GCTGGAGCCGTCGCATGATG                                                                                                                               <  2:1865109/71‑1
                                                                                                                                 GTATTCCCACCGACTGACCATCATGCGACGGCTCCAG‑CGACGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGAT                                                                         >  1:2038449/1‑103
                                                                                                                                 GTATTCCCACCGACTGACCATCATGCGACGGCTCCAG‑CGACGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGAT                                                                         <  2:2038449/103‑1
                                                                                                                                                     TCATGCGTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTG      >  1:465755/1‑150
                                                                                                                                                     TCATGCGTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTG      <  2:1639127/150‑1
                                                                                                                                                       ATGCGTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTGGG    >  1:2013715/1‑150
                                                                                                                                                       ATGCGTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTGGG    >  1:2205656/1‑150
                                                                                                                                                         GCGTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTGGGAG  >  2:1966625/1‑150
                                                                                                                                                         GCGTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATG                                                                        <  2:986078/80‑1
                                                                                                                                                         GCGTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATG                                                                        >  1:986078/1‑80
                                                                                                                                                                                                                                                                                                                
ATCGCTGCTGGTATTGCGCCGCCTCCCAAAATGTCGTGGAAGGATCGCTTCGCCCTGGCTGCAAATTCCCCCATGCGGGGGCCAAGCGAGCTCATCAGCATGGTCAACCGGGATGAGTGTTATCTGTGGGTATTCCCACCGACTGACCATCATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/42495‑42650
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatgcgTC‑GCTGGAGCCGTCGCATGATGGTCAGTCGGTGGGAATACCCACAGATAACACTCATCCCGGTTGACCATGCTGATGAGCTCGCTTGGCCCCCGCATGGGGGAATTTGCAGCCAGGGCGAAGCGATCCTTCCACGACATTTTGGGAG  <  NC_002947/42663‑42517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.