New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	221190 =	58 (0.660)	7 (0.080)	7/236	NT	10.9%	intergenic (+160/‑39)	PP_5431/PP_0169	hypothetical protein/TauD/TfdA family dioxygenase
	?	NC_002947	221212 =	59 (0.700)					intergenic (+182/‑17)	PP_5431/PP_0169	hypothetical protein/TauD/TfdA family dioxygenase

AGGCCTAAGATCTCGGCGCCGACGGCACCCGAGAAGGGGCGAACTTCAAAAACTTGCGGCTGGGCGCTGTCGATGGACGACAAGGCGTTCAAGGCGGCTGACATTTTTCACTCCCACGCAATGCGCGACCTCAATGGCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/221332‑221190 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcaTTGCGTGGGAGTGAAAAATGTCAGCCGCCTTGAACGCCTTGTCGTCCATCGACAGCGCCCAGCCGCAAGTTTTTGAAGTTCGCCCCTTCTCGGGTGCCGTCGGCGCCGAGATCTTAGGCCTGGACCTGGCCAAACCGGTCAGCGCCGA  >  NC_002947/221212‑221359                                                                                                                                                                                                                                                                                                     AGGCCTAAGATCTCGGCGCCGACGGCACCCGAGAAGGGGCGAACTTCAAAAACTTGCGGCTGGGCGCTGTCGATGGACGACAAGGCGTTCAAGGCGGCTGACATTTTTCACTCCCACGCAATGCGCGACCGCAATGGCGCGCAccgacca                                                                                                                                               <  2:1259149/150‑8  GGCCTAAGATCTCGGCGCCGACGGCACCCGAGAAGGGTCGAACTTCAAAAACTTGCGGCTGGGCGCTGTCGATGGACGACAAGGCGTTCAAGGCGGCTGACATTTTTCACTCCCACGCAATGCGCGCCATTGAGGTCGCGCATTGCGTGG                                                                                                                                              <  2:606385/150‑1                                                                                                                   CACGCAATGCGCGACCTCAATGGCGCGCATTGCGTGGGAGTGAAAAATGTCAGCCGCCTTGAACGCCTTGTCGTCCATCGACAGCGC                                                                                            <  1:1325212/87‑1                                                                                                                   CACGCAATGCGCGACCTCAATGGCGCGCATTGCGTGGGAGTGAAAAATGTCAGCCGCCTTGAACGCCTTGTCGTCCATCGACAGCGC                                                                                            >  2:1325212/1‑87                                                                                                                     CGCAATGCGCGACCTCAATGGCGCGCATTGCGTGGGAGTGAAAAATGTCAGCCGCCTTGAACGCCTTGTCGTCCATCGACAGCGCCCAGCCGCAAGTTTTTGAA                                                                         >  1:198427/1‑104                                                                                                                     CGCAATGCGCGACCTCAATGGCGCGCATTGCGTGGGAGTGAAAAATGTCAGCCGCCTTGAACGCCTTGTCGTCCATCGACAGCGCCCAGCCGCAAGTTTTTGAA                                                                         <  2:198427/104‑1                                                                                                                         ATGCGCGACCTCAATGGCGCGCATTGCGTGGGAGTGAAAAATGTCAGCCGCCTTGAAC                                                                                                                   <  1:2142275/58‑1                                                                                                                         ATGCGCGACCTCAATGGCGCGCATTGCGTGGGAGTGAAAAATGTCAGCCGCCTTGAAC                                                                                                                   >  2:2142275/1‑58                                                                                                                                              CATTGGGTGGGAGTGAACAATGACCGCCGCCTCGCACGCCTTGTCGTACATAGCCAGCGCACAGACGCAAGTTTTTGAAGTTAGCCCCTTCTCGTGTGCCGTCGGCGCCGAGATCTTAGGCCTGGACCTGGCCAAACCGGTCAGCGCCGA  <  2:2239131/150‑1                                                                                                                                              CATTGCGTGGGAGTGAAAAATGTCAGCCGCCTTGAACGCCTTGTCGTCAATCGACAGCGCCCAGCCGCAAGTTTTTGAAGTTCGCCCCTTCTCGGGTGCCGTCGGCGCCGAGATCTTAGGCCTGGACCTGGCCAAACCGGTCAGCGCCGA  <  1:142025/150‑1                                                                                                                                                                                                                                                                                                     AGGCCTAAGATCTCGGCGCCGACGGCACCCGAGAAGGGGCGAACTTCAAAAACTTGCGGCTGGGCGCTGTCGATGGACGACAAGGCGTTCAAGGCGGCTGACATTTTTCACTCCCACGCAATGCGCGACCTCAATGGCGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/221332‑221190 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcaTTGCGTGGGAGTGAAAAATGTCAGCCGCCTTGAACGCCTTGTCGTCCATCGACAGCGCCCAGCCGCAAGTTTTTGAAGTTCGCCCCTTCTCGGGTGCCGTCGGCGCCGAGATCTTAGGCCTGGACCTGGCCAAACCGGTCAGCGCCGA  >  NC_002947/221212‑221359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.