New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	359670 =	125 (1.420)	10 (0.120)	9/236	NT	7.8%	intergenic (+27/+93)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein
	?	NC_002947	359728 =	116 (1.380)					intergenic (+85/+35)	gbdR/PP_0299	AraC family transcriptional regulator/hypothetical protein

GCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/359821‑359670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATC  >  NC_002947/359728‑359838                                                                                                                                                                                                                                                                         GCCAGGCCACCGACAAGCGATTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGG                                                                                                                   >  2:97920/1‑150   CAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGC                                                                                                                 <  1:718003/150‑1   CAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGC                                                                                                                 <  2:1628468/150‑1   CAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGC                                                                                                                 >  2:718003/1‑150                                                                               CCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTG                                    >  1:2213715/1‑150                                                                                  CTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTT                                 <  2:2213715/150‑1                                                                                                           AGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAA                                          <  1:1107079/117‑1                                                                                                           AGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAA                                          >  2:1107079/1‑117                                                                                                            GATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACT                                                          >  1:557560/1‑100                                                                                                            GATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACT                                                          <  2:557560/100‑1                                                                                                                 CCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGAT   >  1:2235240/1‑150                                                                                                                 CCGCTGGCTCAAGCTCAGC‑GGTGATCTGTGGGGGCGGGCTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATC  >  2:1952170/1‑150                                                                                                                    CTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGT                               >  1:419179/1‑118                                                                                                                    CTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGT                               <  2:419179/118‑1                                                                                                                                                                                                                                                                         GCCAGGCCATCGACAAGCAACTGTTGCCAGCGTTGGCGCAGTTCAACAAACGCGCGTAATCCATTTACCCAGGACCGGCCCCTTCGCGGAACAAGCCCGCCCCCACAGATCACCGCTGGCTCAAGCTCAGCGGGTGACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/359821‑359670 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcTTGTTCCGCGAAGGGGCCGGTCCTGGGTAAATGGATTACGCGCGTTTGTTGAACTGCGCCAACGCTGGCAACAGTTGCTTGTCGATGGCCTGGCGTACTGCCGGCAGGATC  >  NC_002947/359728‑359838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.