New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	456680 =	67 (0.760)	4 (0.050)	4/236	NT	6.0%	coding (1074/1131 nt)	pqqE	coenzyme PQQ synthesis protein E
	?	NC_002947	456710 =	62 (0.740)					coding (1044/1131 nt)	pqqE	coenzyme PQQ synthesis protein E

TCAAGGCCCGCGAGGAGGCTGAAACCGCCCAGCTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/456717‑456680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgcgGGCCTTGAGGATGATGCCGTGGTCGGTCGACTTGGCGCACACCGGGTCGGCGTTGCTGGCATCACCGGTCAGCATGAAGGCCTGGCAGCGACAGCCGCCGAAGTCCTTTTCTTTCTCGTCGCAGGAGCGGCACGGTTCGCGCATCCA  >  NC_002947/456710‑456856                                                                                                                                                                                           TCAAGGCCCGCGAGGAGGCTGAAACCGCCCAGCTCGCGGGCCTTGAGGATGATGCCGTGGTCGGTCGACTTGGCGCACACCGGGTCGGCGTTGCTGGCATCACCGGTCAGCATGAAGGCCTGGCAGCG                                                           >  1:104779/1‑128 TCAAGGCCCGCGAGGAGGCTGAAACCGCCCAGCTCGCGGGCCTTGAGGATGATGCCGTGGTCGGTCGACTTGGCGCACACCGGGTCGGCGTTGCTGGCATCACCGGTCAGCATGAAGGCCTGGCAGCG                                                           <  2:104779/128‑1        CCGCGAGGAGGCTGAAACCGCCCAGCTCGCGGGCCTTGAGGATGATGCCGTGGTCGGTCGACTTGGCGCACACCGGGTCGGCGTTGCTGGCATCACCGGTCAGCATGAA                                                                       <  1:1307495/109‑1        CCGCGAGGAGGCTGAAACCGCCCAGCTCGCGGGCCTTGAGGATGATGCCGTGGTCGGTCGACTTGGCGCACACCGGGTCGGCGTTGCTGGCATCACCGGTCAGCATGAA                                                                       >  2:1307495/1‑109                                    GCGGGCCTTGAGGATGATGCCGTGGTCGGTCGACTTGGCGCACACCGGGTCGGCGTTGCTGGCATCACCGGTCAGCATGAAGGCCTGGCAGCGACAGCCGCCGAAGTCCTTTTCTTTCTCGTCGCAGGAGCGGCACGGTTCGCGCATCCA  >  1:435984/1‑150                                                                                                                                                                                           TCAAGGCCCGCGAGGAGGCTGAAACCGCCCAGCTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/456717‑456680 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgcgGGCCTTGAGGATGATGCCGTGGTCGGTCGACTTGGCGCACACCGGGTCGGCGTTGCTGGCATCACCGGTCAGCATGAAGGCCTGGCAGCGACAGCCGCCGAAGTCCTTTTCTTTCTCGTCGCAGGAGCGGCACGGTTCGCGCATCCA  >  NC_002947/456710‑456856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.