| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 519639 = | 85 (0.960) | 7 (0.080) | 6/238 | NT | 8.1% | coding (1025/1035 nt) | argC | N‑acetyl‑gamma‑glutamyl‑phosphate reductase |
| ? | NC_002947 | 519661 = | 78 (0.920) | intergenic (+12/‑88) | argC/erpA | N‑acetyl‑gamma‑glutamyl‑phosphate reductase/iron‑sulfur cluster insertion protein ErpA | |||||
TTCTCCCGGCGCGGTAGCCGCCATAAAACTCGATGACGCGCATTATCCGCTTTCCCGAGAAAATCGGTCAAGAATTGTGCGGCTTTAGTCGCGACCTGCAAAAAGGCCCGCACGACGCGGGCCTTTTCCAATGCTGGCGGCCTTACGGCA‑‑‑‑‑‑‑‑GCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/519791‑519639‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ca‑‑‑‑‑‑‑‑gcaTTGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCAGGTCGCGACTAAAGCCGCACAATTCTTGACCGATTTTCTCGGGAAAGCGGATAATGCGCGTCATCGAGTTTTATGGCGGCTACCGCGCCGGGAGAATCAACATGAGCGTCGAA > NC_002947/519661‑519808 TTCTCCGGGCGTGGTCGCAGCCAGAAAACTCGATGACGCGCATTATCCGCTTTCCCGAGAAAATCGGTCAAGAATTGTGCGGCTTTAGTCGCGACCTGCAAAAAGGCCCGCACGACGCGGGCCTTTTCCAATGCTGGCGGCCTTACGGCA < 2:302876/150‑1 TTTAGTCGCGACCTGCAAAAAGGCCCGCACGACGCGGGCCTTTTCCAATGCTGGCGGCCTTACGGCA‑‑‑‑‑‑‑‑GCATTGGAAA < 1:1609416/77‑1 TTTAGTCGCGACCTGCAAAAAGGCCCGCACGACGCGGGCCTTTTCCAATGCTGGCGGCCTTACGGCA‑‑‑‑‑‑‑‑GCATTGGAAA > 2:1609416/1‑77 CTTTTCCAATGCTGGCGGCCTTACGGCA‑‑‑‑‑‑‑‑GCATTGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCA > 1:1996697/1‑66 CTTTTCCAATGCTGGCGGCCTTACGGCA‑‑‑‑‑‑‑‑GCATTGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCA < 2:1996697/66‑1 TTTCCAATGCTGGCGGCCTTACGGCAGCAAGCCGGCATGGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCAGGTCGCGACTAAAGCCGCACAATTCTTGACCGATTTTCTCGGGAAAGCGGATAATGCGCGTCATCGAGTTTTATGGCG > 1:1857753/1‑150 TGCTGGCGGCCTTACGGCA‑‑‑‑‑‑‑‑GCATTGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCAGGTCGCGACTAAAGCCGCACAATT < 1:890508/81‑1 TGCTGGCGGCCTTACGGCA‑‑‑‑‑‑‑‑GCATTGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCAGGTCGCGACTAAAGCCGCACAATT > 2:890508/1‑81 CATTGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCAGGTCGCGACTAAAGCCGCACAATTCTTGACCGATTTTCTCGGGAAAGCGGATAATGCGCGTCATCGAGTTTTATGGCGGCTACCGCGCCGGGAGAATCAACATGAGCGTCGAA > 2:985317/1‑150 ATTGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCAGGTCGCGACTAAAGCCGCACAATTCTTGA < 1:117422/65‑1 ATTGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCAGGTCGCGACTAAAGCCGCACAATTCTTGA > 2:117422/1‑65 TTCTCCCGGCGCGGTAGCCGCCATAAAACTCGATGACGCGCATTATCCGCTTTCCCGAGAAAATCGGTCAAGAATTGTGCGGCTTTAGTCGCGACCTGCAAAAAGGCCCGCACGACGCGGGCCTTTTCCAATGCTGGCGGCCTTACGGCA‑‑‑‑‑‑‑‑GCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/519791‑519639‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ca‑‑‑‑‑‑‑‑gcaTTGGAAAAGGCCCGCGTCGTGCGGGCCTTTTTGCAGGTCGCGACTAAAGCCGCACAATTCTTGACCGATTTTCTCGGGAAAGCGGATAATGCGCGTCATCGAGTTTTATGGCGGCTACCGCGCCGGGAGAATCAACATGAGCGTCGAA > NC_002947/519661‑519808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |