New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	535037 =	101 (1.140)	5 (0.060)	7/228	NT	5.0%	intergenic (+19/‑101)	nusG/rplK	transcription antipausing factor NusG/50S ribosomal protein L11
	?	NC_002947	535064 =	96 (1.180)					intergenic (+46/‑74)	nusG/rplK	transcription antipausing factor NusG/50S ribosomal protein L11

GGTTGGCCTGGCCGGCCTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGCTGCGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/535195‑535037 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcggggtTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGCCAACCCAAGCCCACCCGTT  >  NC_002947/535064‑535209                                                                                                                                                                                                                                                                                                                   GGTTGGCCTGGCCGGCCTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGG                                                                                                                                                             >  2:718020/1‑150  GTTGGCCTGGCCGGCCTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGC                                                                                                                                                            >  1:1351133/1‑150  GTTGGCCTGGCCGGACTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGC                                                                                                                                                            >  2:145036/1‑150   TTGGCCTGGCCGGCCTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGCT                                                                                                                                                           >  1:2296949/1‑150      GCCTGGCCGGCCTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGCTGCG                                                                                                                                                        >  2:989485/1‑150      GCCTGGCCGGCCTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGCTGCG                                                                                                                                                        <  2:1208588/150‑1      GCCTGGCCGGCCTTAACGTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTCCTCCAAAATCGGGTACGAACGCC‑GATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGCTGCGG                                                                                                                                                       <  1:939337/150‑1        CTGGCCGGCCTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGCTGCGGG                                                                                                                                                      <  2:1156389/150‑1        CTGGCCGGCCTTAACGTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGCGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGGGACGACAAAACCCCGCAGCACACAGGGCTGCGGG                                                                                                                                                      <  2:1022005/150‑1           GCCGGCCTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGCTGCGGGGga                                                                                                                                                   >  1:626478/1‑148                                                               TACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCCCTGTGTGCTGCGGGGTTTT                                                                                                                                                 >  1:1717845/1‑100                                                               TACTCCAAAATCGGGTAAGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCCCTGTGTGCTGCGGGGTTTT                                                                                                                                                 <  2:1717845/100‑1                                                                                          ATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTC                                                                                                                                              <  2:1478552/76‑1                                                                                          ATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCCCTGTGTGCTGCGGGGTTTTGTC                                                                                                                                              >  1:1478552/1‑76                                                                                                                                     ACCCCGCAGCACACAGGGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCC                         >  1:1172049/1‑150                                                                                                                                       CCCGCAGCACACAGGGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCA                                                                         <  1:639902/100‑1                                                                                                                                       CCCGCAGCACACAGGGCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCA                                                                         >  2:639902/1‑100                                                                                                                                                      GCTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGGTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGCCAACCCAAGCCCA        <  2:2312976/150‑1                                                                                                                                                       CTGCGGGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGCCAACCCAAGCCCAC       <  1:653942/150‑1                                                                                                                                                            GGGTTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGCCAACCCAAGCCCACCCGTT  >  1:1902024/1‑150                                                                                                                                                                                                                                                                                                                   GGTTGGCCTGGCCGGCCTTAACTTGCAGCTTGATGTAAGCCTGAATCTTCTTAGCCATGAGCTACTCCAAAATCGGGTACGAACGCCTGATGGCTCCCCGGATGACTTGCGTTTTATCCCAGTGACGACAAAACCCCGCAGCACACAGGGCTGCGGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/535195‑535037 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcggggtTTTGTCGTCACTGGGATAAAACGCAAGTCATCCGGGGAGCCATCAGGCGTTCGTACCCGATTTTGGAGTAGCTCATGGCTAAGAAGATTCAGGCTTACATCAAGCTGCAAGTTAAGGCCGGCCAGGCCAACCCAAGCCCACCCGTT  >  NC_002947/535064‑535209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.