| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 917715 | 83 (0.940) | 8 (0.100) | 7/226 | NT | 9.3% | intergenic (‑146/+53) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| ? | NC_002947 | = 917731 | 80 (1.000) | intergenic (‑162/+37) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D | |||||
GTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/917562‑917715‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacccgcgaaGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAATGGCCCTGC < NC_002947/917731‑917586 GTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCG > 1:1046650/1‑150GTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTGGTAGGAGCGGGTTTACCCG > 2:1120783/1‑150 GGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCG > 1:1529816/1‑150 GGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGA > 1:2000226/1‑150 GCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTGGTAGGAGCGG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTG < 1:361168/150‑1 GGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGTAGCGGGTTT‑CCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTA < 2:2321493/150‑1 ATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCTTCGCCGGCGTTCGCGG < 2:49015/113‑1 ATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCTTCGCCGGCGTTCGCGG > 1:49015/1‑113 AAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTA > 2:4605/1‑106 AAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTA < 1:4605/106‑1 AAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGT < 2:914389/123‑1 AAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGT > 1:914389/1‑123 TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAATG < 1:251422/150‑1 TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAATG < 1:251385/150‑1 CCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAATGGCC < 1:1132227/150‑1 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAATGGCCC > 1:33587/1‑150 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAATGGCCC > 2:564043/1‑150 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAAT > 2:1887044/1‑145 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAAT < 1:1887044/145‑1 CGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACCATGCCCGCTTCCCTAGAATATCGCCGCCGCGAATGGCCCT < 1:2230842/150‑1 CGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCAGCTTCCCTAGAATATCGCCGCCGCGAATGGCCat > 2:1191802/1‑148 GCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC > 2:1460869/1‑38 GCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC < 1:1460869/38‑1 CGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAATGGCCCTGC > 1:246793/1‑150 CGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCC > 2:1179237/1‑113 CGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCC < 1:1179237/113‑1 GTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/917562‑917715‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttacccgcgaaGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGCGAATGGCCCTGC < NC_002947/917731‑917586 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |