| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1076838 | 66 (0.750) | 14 (0.170) | 12/238 | NT | 17.4% | coding (212/999 nt) | mreC | cell shape‑determining protein MreC |
| ? | NC_002947 | = 1076858 | 70 (0.830) | coding (232/999 nt) | mreC | cell shape‑determining protein MreC | |||||
GATGGAGTCGTACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1076710‑1076838‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagggCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAGGGCTTCGGTCTTGAGCTTCTCGTTTTCGGCAATCAGCTCGGTGCGGCTACCGAACTGGCCGGCCACACCTTGCCAGGCACGCTGTGGCAAATCGGTGATCCAGTACGACTCCAT < NC_002947/1076858‑1076711 GATGGAGTCGTACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGCCGCCAGCTTCTGCAGGCGCC < 1:706859/150‑1 TGGAGTCGTACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTCGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCTCTGCTGCTG‑CAGGGGCGCCAGCTTCTGCAGGCGCCCC < 1:1893866/150‑1 GGAGTCGTACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGCCGCCAGCTTCTGCAGGCGCCCCT < 1:2146323/150‑1 GTCGTACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCTTTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGCCGCCAGCTTCTGCAGGCGCCCCTGCA < 2:1592056/150‑1 TACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGCCGCCAGCTTCTGCAGGCGCCCC < 2:440753/142‑1 TACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGCCGCCAGCTTCTGCAGGCGCCCC > 1:440753/1‑142 TACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAG < 1:1441261/117‑1 TACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAG > 2:1441261/1‑117 GATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGG < 1:1735319/113‑1 GATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGG > 2:1735319/1‑113 CTGGCAAGGTGTGGCCGGCCAGTTCGGTGGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCT‑CGGTCAGGGCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAG > 1:2164796/1‑124 CTGGCAAGGTGTGGCCGGCCAGTTCGGTGGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCT‑CGGTCAGGGCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAG < 2:2164796/124‑1 GTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGGCGCCAGCTTCTGCAGGCGCCCC > 1:1993659/1‑105 GTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGGCGCCAGCTTCTGCAGGCGCCCC < 2:1993659/105‑1 CGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAGGGCTTCG > 2:1944068/1‑100 CGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAGGGCTTCG < 1:1944068/100‑1 CGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGCCGCCAGCTTCTGCAGGCGCCC < 1:2135128/58‑1 CGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGGCCGCCAGCTTCTGCAGGCGCCC > 2:2135128/1‑58 GGGCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAGGGCTTCGGTCTTGAGCTTCTCGTTTTCGGCAATCAGCTCGGTGCGGCTACCGAACTGGCCGGCCACACCTTGCCAGGCACGCTGTGGCAAATCGGTGATCCAGTACGACTCCA < 2:987736/150‑1 GGCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAGGGCTTCGGTCTTGAGCTTCTCGTTTTCGGCAATCAGCTCGGTGCGGCTACCGAACTGGCCGGCCACACCTTGCCAGGCACGCTGTGGCAAATCGGTGATCCAGTACGACTCCAT < 1:356930/150‑1 GGCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAGGGCTTCGGTCTTGAGCTTCTCGTTTTCGGCAATCAGCTCGGTGCGGCTACCGAACTGGCCGGCCACACCTTGCCAGGCACGCTGTGGCAAATCGGT > 1:284107/1‑132 GGCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAGGGCTTCGGTCTTGAGCTTCTCGTTTTCGGCAATCAGCTCGGTGCGGCTACCGAACTGGCCGGCCACACCTTGCCAGGCACGCTGTGGCAAATCGGT < 2:284107/132‑1 GATGGAGTCGTACTGGATCACCGATTTGCCACAGCGTGCCTGGCAAGGTGTGGCCGGCCAGTTCGGTAGCCGCACCGAGCTGATTGCCGAAAACGAGAAGCTCAAGACCGAAGCCCTGCTGCTG‑CAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1076710‑1076838‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagggCCGCCAGCTTCTGCAGGCGCCCCTGCAGCAGCAGGGCTTCGGTCTTGAGCTTCTCGTTTTCGGCAATCAGCTCGGTGCGGCTACCGAACTGGCCGGCCACACCTTGCCAGGCACGCTGTGGCAAATCGGTGATCCAGTACGACTCCAT < NC_002947/1076858‑1076711 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |