| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1362413 | 95 (1.080) | 5 (0.060) | 4/232 | NT | 5.1% | coding (797/1347 nt) | phoQ | sensor protein |
| ? | NC_002947 | = 1362442 | 97 (1.180) | coding (826/1347 nt) | phoQ | sensor protein | |||||
ACCCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1362257‑1362413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagcaCCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGAC < NC_002947/1362442‑1362296 ACCCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCT < 1:1187181/150‑1 CCACGCTAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG < 1:886857/150‑1 CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG > 2:49924/1‑150 CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG > 1:1855906/1‑150 CCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTATGTTGAGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTG > 1:406472/1‑150 ACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCA < 1:1927951/150‑1 GAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAtc > 2:1518818/1‑146 GAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAtc < 1:1518818/148‑3 TTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA < 2:406472/150‑1 GCGCACGCGCTATCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCA < 2:1882629/150‑1 GCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCA > 1:1882629/1‑150 GTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA < 1:343678/116‑1 GTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA > 2:343678/1‑116 TCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGaa < 2:1747548/71‑3 TCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCA > 1:1747548/1‑71 TTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAA < 2:1437737/150‑1 GCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACA < 2:1314527/150‑1 GCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCATGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGAC > 1:1727835/1‑150 GCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGAC < 1:2163991/150‑1 GCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGAC < 1:924877/150‑1 ACCCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1362257‑1362413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagcaCCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGAC < NC_002947/1362442‑1362296 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |