| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1450592 = | 107 (1.210) | 6 (0.070) | 6/240 | NT | 5.4% | intergenic (‑42/‑232) | PP_1269/PP_1270 | universal stress protein family protein/LysR family transcriptional regulator |
| ? | NC_002947 | 1450689 = | 105 (1.230) | intergenic (‑139/‑135) | PP_1269/PP_1270 | universal stress protein family protein/LysR family transcriptional regulator | |||||
TGGGGCATTTATTCACTGGGCGTATTCGGCCTTAAATGAAGCATTGGCAGGTCTGGCCTTTTCGCGGGCGCGCCCGCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1450742‑1450592‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAACGGAAAACGGCCATGCAACTCCCGGA > NC_002947/1450689‑1450837 TGGGGCATTTATTCACTGGGCGTATTCGGCCTTAAATGAAGCATTGGCAGGTCTGGCCTTTTCGCGGGCGCGCCCGCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGC < 2:1531484/150‑1TGGGGCATTTATTCACTGGGCGTATTCGGCCTTAAATGAAGCATTGGCAGGTCTGGCCTTTTCGCGGGCGCGCCCGCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGC < 1:686598/150‑1 TTCACTGGGCGTATTCGGCCTTAAATGAAGCATTGGCAGGTCTGGCCTTTTCGCGGGCGCGCCCGCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGC > 2:923158/1‑139 TTCACTGGGCGTATTCGGCCTTAAATGAAGCATTGGCAGGTCTGGCCTTTTCGCGGGCGCGCCCGCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGC < 1:923158/139‑1 GTCTGGCCTTTTCGCGGGCGCGCCCGCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATG > 1:865063/1‑150 TTTTCGCGGGCGCGCCCGCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAAGGCCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCA > 1:1365186/1‑150 TCGCGGGCGCGCCCGCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGC < 2:865063/150‑1 GCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCG > 2:2057434/1‑150 CACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGA < 1:2057434/150‑1 GGAGCGGGCATGCCCGCGAAAAGGCCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAAC < 2:1365186/150‑1 GCCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATTCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAACGGAAAACGGCCATGCAACTCCCG > 2:912933/1‑150 GCCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAACGGAAAACGGCCATGCAACTCCCG > 1:357500/1‑150 GCCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAACGGAAAACGGCCATGCAACTCCCG < 1:1280868/150‑1 CCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAACGGAAAACGG < 2:2229899/135‑1 CCAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAATGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAACGGAAAACGG > 1:2229899/1‑135 CAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAACGGAAAACGGCCATGCAACTCCCGGA < 2:240341/150‑1 CAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAACGGAAAACGGCCATGCAACTCCCGGA > 2:770040/1‑150 TGGGGCATTTATTCACTGGGCGTATTCGGCCTTAAATGAAGCATTGGCAGGTCTGGCCTTTTCGCGGGCGCGCCCGCTGCCACAGGCCCCCCCACAATTCCCGAATGTTGTGCGACACACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1450742‑1450592‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccAGACCTGCCAATGCTTCATTTAAGGCCGAATACGCCCAGTGAATAAATGCCCCACCACGCAAGAGCGCATTGCGTCTGATGCAATCCACCAACCTGCTACCATCGCGTTTCCCGCAGCTGTAACGGAAAACGGCCATGCAACTCCCGGA > NC_002947/1450689‑1450837 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |