| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1788657 = | 78 (0.880) | 6 (0.070) | 6/238 | NT | 7.4% | coding (88/756 nt) | uppS | (2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase |
| ? | NC_002947 | 1788690 = | 76 (0.900) | coding (121/756 nt) | uppS | (2E,6E)‑farnesyl‑diphosphate specific ditrans,polycis‑undecaprenyl‑diphosphate synthase | |||||
TCAGCGCACCGACCTCTTCGGCAGGGCGCTGCCAGTTCTCGCTGGAGAAGGCGAACAGGGTCAGTACCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTTGTGCCCGGCCACGCCGGGCAGCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1788810‑1788657‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCC > NC_002947/1788690‑1788837 cccGCGCCCCGACCTCTTCGGCCGGGCGCTGCCAGTTCTCGCTGGAGAAGGCGAACAGGGTCAGTACCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTTGTGCCCGGCCACGCCGGGCAGCA < 2:2254679/147‑1TCAGCGCACCGACCTCTTCGGCAGGGCGCTGCCAGTTCTCGCTGGAGAAGGCGAACAGGGTCAGTACCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTTGTGCCCGGCCACGCCGGGCAGCA < 1:2244900/150‑1 GCGCACCGACCTCTTCGGCAGGGCGCTGCCAGTTCTCGCTGGAGAAGGCGAACAGGGTCAGTACCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTTGTGCCCGGCCACGCCGGGCCGCAGGC > 2:516970/1‑150 GCGCACCGACCTCTTCGGCAGGGCGCTGCCAGTTCTCGCTGGAGAAGGCGAACAGGGTCAGTACCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTTGTGCCCGGCCACGCCGGGCAGCAGGC > 2:1397863/1‑150 GCACCGACCTCTTCGGCAGGGCGCTGCCAGTTCTCGCTGGAGAAGGCGAACAGGGTCAGTACCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTTGTGCCCGGCCACGCCGGGCACAAGGCGG < 2:742380/150‑1 GGTCATTACCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTGCTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATG < 2:2134692/106‑1 GGTCAGTACCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTGCTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATG > 1:2134692/1‑106 CCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTGCTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTC > 1:1362196/1‑104 CCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTGCTGCCCGGCGTGGCCGGGCACAAGGCGGGTGTGGATGCCGTTC < 2:1362196/104‑1 CCGCCTTGTGCCCGGCCACGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGC > 2:1278812/1‑150 TGCCCGGCCACGCCGGGCACAAGGCGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGG > 2:1253760/1‑150 CGGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCC < 1:1461748/150‑1 TCAGCGCACCGACCTCTTCGGCAGGGCGCTGCCAGTTCTCGCTGGAGAAGGCGAACAGGGTCAGTACCTCGACCCCGGACTTGGCACAGACTTCGATGACCGCGCGAACGGCATCCACACCCGCCTTGTGCCCGGCCACGCCGGGCAGCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1788810‑1788657‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcgGGTGTGGATGCCGTTCGCGCGGTCATCGAAGTCTGTGCCAAGTCCGGGGTCGAGGTACTGACCCTGTTCGCCTTCTCCAGCGAGAACTGGCAGCGCCCTGCCGAAGAGGTCGGTGCGCTGATGGAGCTGTTCTTCTCGGCGCTGCGCC > NC_002947/1788690‑1788837 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |