New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2063227	63 (0.710)	12 (0.170)	10/198	NT	20.1%	intergenic (+41/‑166)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	= 2063271	45 (0.640)					intergenic (+85/‑122)	PP_1838/PP_1839	membrane protein/hypothetical protein

CGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2063054‑2063227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccattcgcgggcttgcccgctcGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAGCAGGCTCTTGGTCGCGGTCTGG  <  NC_002947/2063271‑2063123                                                                                                                                                                                                                                                                                                                                     CGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCG                                                                                                                                                                               <  1:993492/150‑1 CGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCG                                                                                                                                                                               <  1:167509/150‑1    GTTCAAGGCCGAACTGATCGAAAGCCCGGACCCGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCAGGGCGCACCGAAGTAAACCGGGGCCGCGTTGCGGCC                                                                                                                                                                            >  1:835860/1‑150    GTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCC                                                                                                                                                                            <  2:564411/150‑1        AAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATT                                                                                                                                                                        >  1:1061195/1‑150        AAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATT                                                                                                                                                                        >  2:1568713/1‑150             CGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGG                                                                                                                                                                   >  1:1519876/1‑150               AACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC                                                                                                                                                                 >  2:291602/1‑150                   GATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGC                                                                                                                                                             <  1:624029/150‑1                     cCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCaagccc                                                                                                                                                           <  1:1518948/149‑7                         AAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTC                                                                                                                                                       <  2:1420006/150‑1                                   CAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACC                                                                                                                                             >  2:1079409/1‑150                                                   AGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAAC                                                                                                                             >  1:690282/1‑150                                                                 TATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCT                                                                                                               <  2:179418/150‑1                                                                 TATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGC                                                                                                                 <  2:97412/148‑1                                                                 TATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGC                                                                                                                 >  1:97412/1‑148                                                                   TATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTC                                                                                                                                                       <  2:1512402/108‑1                                                                   TATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTC                                                                                                                                                       >  1:1512402/1‑108                                                                    ATCCGGCCCGCGACCAATAGCCTGCTGGATAACACCGCCGGCTTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTG                                                                                                            <  2:884384/150‑1                                                                        AGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAG                                                                                                        >  2:2209627/1‑150                                                                        AGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCT                                                                                                               >  2:641347/1‑143                                                                        AGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTAGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCT                                                                                                               <  1:641347/143‑1                                                                         GACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGC                                                                                                       <  1:2209627/150‑1                                                                           CCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGG                                                                                                     <  1:1079409/150‑1                                                                             GCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGC                                                                                                   <  2:690282/150‑1                                                                                                                    CACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC                                                                                                                                                                 <  2:932500/49‑1                                                                                                                    CACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGC                                                                                                                                                                 >  1:932500/1‑49                                                                                                                            ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGC                                                                                                                                                             >  1:2136619/1‑45                                                                                                                            ACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGC                                                                                                                                                             <  2:2136619/45‑1                                                                                                                                                        CCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAG                        >  2:273569/1‑150                                                                                                                                                        CCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGT                                                                  >  2:1771650/1‑108                                                                                                                                                        CCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGT                                                                  <  1:1771650/108‑1                                                                                                                                                         CCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATC                           >  2:1190774/1‑146                                                                                                                                                         CCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATC                           <  1:1190774/146‑1                                                                                                                                                         CCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCAACACGCCGGCGGTGTTATCCAGC                       >  1:1203821/1‑150                                                                                                                                                          CATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAGCA                      >  2:235030/1‑150                                                                                                                                                                 GGGCTTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGACCGCGAATGTGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAGCCGGCTCTT               >  2:448235/1‑150                                                                                                                                                                     TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTG                                                                                                                       >  1:1294863/1‑42                                                                                                                                                                     TTGCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTG                                                                                                                       <  2:1294863/42‑1                                                                                                                                                                       GCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC                                                                                           <  2:1864188/68‑1                                                                                                                                                                       GCCCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGC                                                                                           >  1:1864188/1‑68                                                                                                                                                                         tCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAGCAGGCTCTTGGTCGCGG       >  1:1156373/2‑150                                                                                                                                                                         CCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAGCAGGCTCTTGGTCGCGG       >  1:1568713/1‑150                                                                                                                                                                         CCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACAACGCCGCCGGTGTTATCCAGCAGGCGCTTGGTCGCGG       >  2:1191314/1‑150                                                                                                                                                                         CCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAAT                                                                                       <  2:1703686/70‑1                                                                                                                                                                         CCGCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAAT                                                                                       >  1:1703686/1‑70                                                                                                                                                                           GCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTG                                <  1:2031218/123‑1                                                                                                                                                                           GCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTG                                >  2:2031218/1‑123                                                                                                                                                                           GCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGT                                                      >  2:1899994/1‑101                                                                                                                                                                           GCTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGT                                                      <  1:1899994/101‑1                                                                                                                                                                           GCTAGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTCTACTTCGGTGTGCCGTGCACCACGCCGGCGTCGTGATCCAGCAGGCTCTTCGTCGCGGac     >  1:1652691/1‑148                                                                                                                                                                            CTCGCACAGGACGTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAGCAGGCTCTTGGTCGCGGTCT    <  1:1491570/150‑1                                                                                                                                                                            CTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAGCAGGCTCTTGGTCGCGGTCT    <  2:1203821/150‑1                                                                                                                                                                            CTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGT                                 <  2:403077/121‑1                                                                                                                                                                            CTCGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGT                                 >  1:403077/1‑121                                                                                                                                                                              CGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAGCAGGCTCTTGGTCGCGGTCTGG  <  1:235030/150‑1                                                                                                                                                                                                                                                                                                                                     CGAGTTCAAGGCCGAACTGATCGAAAGCCCGGACCAGCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAAGTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2063054‑2063227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccattcgcgggcttgcccgctcGCACAGGACCTGCACAAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCGGGCAAGCCCGCGAATGGGCCGCAACGCGGCCCCGGTTTACTTCGGTGTGCCGTGCACCACGCCGGCGGTGTTATCCAGCAGGCTCTTGGTCGCGGTCTGG  <  NC_002947/2063271‑2063123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.