| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2809530 | 101 (1.140) | 6 (0.070) | 6/238 | NT | 5.6% | intergenic (‑232/‑107) | PP_5525/thrS | hypothetical protein/threonine‑‑tRNA ligase |
| ? | NC_002947 | = 2809537 | 106 (1.250) | intergenic (‑239/‑100) | PP_5525/thrS | hypothetical protein/threonine‑‑tRNA ligase | |||||
TTCACCGCTGCGGTGCAATTTCCAAATATTTCTGCCTGGGGTGCAACCCGCGTGCTAGCATGCTCGGCTTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2809377‑2809530‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccCCACAGTGGCAGAAGCCTTTCGGCTTGTCAGGGACGAACCAGAGTGACTGGAAAGAAAAAAGATAGCTGCAGCCGGCAACAGCGCGACTGCAAGCCGAGCATGCTAGCACGCGGGTTGCACCCCAGGCAGAAATATTTGGAAATTGCAC < NC_002947/2809537‑2809389 TTCACCGCTGCGGTGCAATTTCCAAATATTTCTGCCTGGGGTGCAACCCGCGTGCTAGCATGCTCGGCTTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTC > 1:1107606/1‑150TTCACCGCTGCGGTGCAATTTCCAAATATTTCTGCCTGGGGTGCAACCCGCGTGCTAGCATGCTCGGCTTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTACCTGACAAGCAGAATGGCTTC > 2:1883753/1‑150TTCACCGCTGCGGTGCAATTTCCAAATATTTCTGCCTGGGGTGCAACCCGCGCGCGAGGGGGCTCGGCTTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTC > 2:207158/1‑150 TCACCGCTGCGGTGCAATTTCCAAATATTTCTGCCTGGGGTGCAACCCGCGTGCTAGCATGCTCGGCTTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCCGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCT < 1:758346/150‑1 TCACCGCTGCGGTGCAATTTCCAAATATTTCTGCCTGGGGTGCAACCCGCGTGCTAGCATGCTCGGCTTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCT < 2:938435/150‑1 ACCGCTGCGGTGCAATTTCCAAATATTTCTGCCTGGGGTGCAACCCGCGTGCTAGCATGCTCGGCTTGCATTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCTGC > 1:1330736/1‑150 GTGCAACCCGCGTGCTAGCATGCTCGGCTTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCTG > 1:1931376/1‑112 GTGCAACCCGCGTGCTAGCATGCTCGGCTTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCTG < 2:1931376/112‑1 TTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCTGCCCCACAGTGGCAGAAG > 1:724962/1‑101 TTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCTGCCCCACAGTGGCAGAAG < 2:724962/101‑1 TTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCTGCCCCACAGTGGCAGAAGC < 2:1751402/69‑1 TTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCTGCCCCACAGTGGCAGAAGC > 1:1751402/1‑69 CCCTGACAAGCCGAAAGGCTTCTGCCACTGTGGGGCAGAAGCCTTTCGGCTTGTCAGGGACGAACCAGAGTGACTGGAAAGAAAAAAGATAGCTGCAGCCGGCAACAGCGCGACTGCAAGCCGAGCATGC > 1:2209447/1‑130 CCCTGACAAGCCGAAAGGCTTCTGCCACTGTGGGGCAGAAGCCTTTCGGCTTGTCAGGGACGAACCAGAGTGACTGGAAAGAAAAAAGATAGCTGCAGCCGGCAACAGCGCGACTGCAAGCCGAGCATGC < 2:2209447/130‑1 TGCCCCACAGTGGCAGAAGCCTTTCGGCTTGTCAGGGACGAACCAGAGTGACTGGAAAGAAAAAAGATAGCTGCAGCCGGCAACAGCGCGACTGCAAGCCGAGCATGCTAGCACGCGGGTTGCACCCCAGGCAGAAATATTTGGAAATTG > 1:101566/1‑150 CCCCACAGTGGCAGAAGCCTTTCGGCTTGTCAGGGACGAACCAGAGTGACTGGAAAGAAAAAAGATAGCTGCAGCCGGCAACAGCGCGACTGCAAGCCGAGCATGCTAGCACGCGGGTTGCACCCCAGGCAGAAATATTTGGAAATTGCA < 1:465296/150‑1 CCCCACAGTGGCAGAAGCCTTTCGGATTGTCAGGGACGAACCAGAGTGACTGGAAAGAAAAAAGATAGCTGCAGCCGGCAACAGCGCGACTGCAAGCCGAGCATGCTAGCACGCGGGTTGCACCCCAGGCAGAAATATTTGGAAATTGCA > 1:2229260/1‑150 CCCACAGTGGCAGAAGCCTTTCGGCTTGTCAGGGACGAACCAGAGTGACTGGCAAGAAAAAAGATAGCTGCAGCCGGCAACAGCGCGACTGCAAGCCGAGCATGCTAGCACGCGGGTTGCACCCCAGGCAGAAATATTTGGAAATTGCAC > 1:355757/1‑150 TTCACCGCTGCGGTGCAATTTCCAAATATTTCTGCCTGGGGTGCAACCCGCGTGCTAGCATGCTCGGCTTGCAGTCGCGCTGTTGCCGGCTGCAGCTATCTTTTTTCTTTCCAGTCACTCTGGTTCGTCCCTGACAAGCCGAAAGGCTTCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2809377‑2809530‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgccCCACAGTGGCAGAAGCCTTTCGGCTTGTCAGGGACGAACCAGAGTGACTGGAAAGAAAAAAGATAGCTGCAGCCGGCAACAGCGCGACTGCAAGCCGAGCATGCTAGCACGCGGGTTGCACCCCAGGCAGAAATATTTGGAAATTGCAC < NC_002947/2809537‑2809389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |