New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3383608	72 (0.820)	8 (0.090)	8/248	NT	11.2%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 4970504	55 (0.620)					intergenic (‑217/+177)	fliC/PP_4379	flagellin/3‑oxoacyl‑ACP synthase

CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3383477‑3383608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCATGCCAGTAT  <  NC_002947/4970504‑4970414                                                                                                                                                                                                                                 CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAAAAAGAATTTCCTAATTTTTGCATTATCTCGGTGTGACCCCGATGCGGCATTCAccaca                                                                           >  2:1018919/1‑145                          TTGGGCGCGAAGCAGTCTTTGCTGATCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATA                                                  >  2:2262301/1‑150                                                                TCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAG                      >  1:568880/1‑140                                                                TCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAG                      <  2:568880/140‑1                                                                      CGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCATTCCA      <  2:2262360/150‑1                                                                          TAAATACAATAGCTTACAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCATGCCAGTAT  <  1:1018919/150‑1                                                                                                       CTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCAT          <  1:436691/113‑1                                                                                                       CTAATTTTTGCCTTATCTCGGCATGACCCCGATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCAT          >  2:436691/1‑113                                                                                                                                                                                                                                 CTTCCTCAATGGATGGCTGAAGCGATTGGGCGCGAAGCAGTCTTTGCTGAGCAGGGCTTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3383477‑3383608 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGAGGCATTCAGCCCAGTTCAAACAGTTTTTGACGCCAATAAACCGCCCTTAACCCCTTGATTTCTCAGGGCTGGCCCCATGCCAGTAT  <  NC_002947/4970504‑4970414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.