New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4094693	82 (0.930)	11 (0.140)	8/224	NT	12.3%	intergenic (+65/+70)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
	?	NC_002947	= 4094738	83 (1.040)					intergenic (+110/+25)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator

ACCCGCAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4094534‑4094693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtactggcctCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAA  <  NC_002947/4094738‑4094593                                                                                                                                                                                                                                                                                                                    ACCCGCAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACT                                                                                                                                                              >  1:996019/1‑150   CCGCAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGT                                                                                                                                                            >  1:1284966/1‑150    CGCAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTA                                                                                                                                                           <  2:2132175/150‑1    CGCAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTA                                                                                                                                                           <  1:1432650/150‑1                            TGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGATAG                                                                                                                                   >  1:1287569/1‑150                                                   CTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCG                                                                                                            <  2:1503355/150‑1                                                         CGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                      <  2:1287569/150‑1                                                                                                      GCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGC                                                                                                           <  2:2267991/100‑1                                                                                                      GCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGC                                                                                                           >  1:2267991/1‑100                                                                                                         AGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCCAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                      >  2:126768/1‑102                                                                                                         AGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCA                                                                                                 <  2:589259/107‑1                                                                                                         AGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCA                                                                                                 >  1:589259/1‑107                                                                                                         AGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                      <  1:126768/102‑1                                                                                                                  AAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACCGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTG                                                                                                                <  1:27247/83‑1                                                                                                                  AAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACCGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTG                                                                                                                >  2:27247/1‑83                                                                                                                                                     CTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAA                                                                               <  2:1011061/81‑1                                                                                                                                                     CTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAA                                                                               >  1:1011061/1‑81                                                                                                                                                      TGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGT         >  2:1631589/1‑150                                                                                                                                                      TGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGT         >  2:2122576/1‑150                                                                                                                                                           TGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACC    <  2:169456/150‑1                                                                                                                                                             GCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAA  >  2:1444656/1‑150                                                                                                                                                              CCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAAC                                         >  2:1470579/1‑110                                                                                                                                                              CCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAAC                                         <  1:1470579/110‑1                                                                                                                                                                TCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAG                                                              >  2:1269598/1‑87                                                                                                                                                                TCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAG                                                              <  1:1269598/87‑1                                                                                                                                                                                                                                                                                                                    ACCCGCAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4094534‑4094693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtactggcctCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAA  <  NC_002947/4094738‑4094593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.