New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4150085	89 (1.010)	13 (0.170)	11/212	NT	14.2%	intergenic (+40/‑357)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein
	?	NC_002947	= 4150116	81 (1.080)					intergenic (+71/‑326)	PP_3654/PP_3655	leucine‑responsive regulatory protein/cytosine/purine/uracil/thiamine/allantoin permease family protein

GCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4149920‑4150085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgcTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGGAA  <  NC_002947/4150116‑4149972                                                                                                                                                                                                                                                                                                                         GCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCACTGTGAAACGCTTAAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCT                                                                                                                                                                   >  1:285200/1‑150   CAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTTATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTC                                                                                                                                                                 >  2:11778/1‑150     AGGAACTGCCGGAACATCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGC                                                                                                                                                               >  2:1737672/1‑150       GACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGG                                                                                                                                                             <  2:1415741/150‑1          CTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCCGTCTCCTAACGTGACGACCCCTTCtggggaa                                                                                                                                                          >  2:1885460/1‑143          CTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCCCGACCTTGGTGGTGAAGGAAGTGAGCCAGGATCGTTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGcga                                                                                                                                                          >  1:579750/1‑147             CCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAAC                                                                                                                                                       <  2:86289/150‑1                  GTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCc                                                                                                                                                  >  2:1555115/1‑149                              GTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTTATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCGCCTGCGACGGGC                                                                                                                                      <  1:11778/150‑1                                          CCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTT                                                                                                                          <  1:1944070/150‑1                                              ACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC                                                                                                                                                   <  2:963666/121‑1                                              ACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC                                                                                                                                                   >  1:963666/1‑121                                                  GTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGC                                                                                                                  <  2:793705/150‑1                                                   TATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGT                                                                                                                                                           <  1:1842099/108‑1                                                   TATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGT                                                                                                                                                           >  2:1842099/1‑108                                                    ATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTCCCTATTGTGGCGTTCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGG                                                                                                                <  2:902628/150‑1                                                     TTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGG                                                                                                               <  1:1590093/150‑1                                                                      TTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGT                                                                                                              <  2:1670799/134‑1                                                                      TTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGT                                                                                                              >  1:1670799/1‑134                                                                                               AAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGG                                                                                                               >  2:15164/1‑108                                                                                               AAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGG                                                                                                               <  1:15164/108‑1                                                                                                   GATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGG                                                                                                               >  1:176669/1‑104                                                                                                   GATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGG                                                                                                               <  2:176669/104‑1                                                                                                     TCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTAC                                                                                                                                   <  1:335336/82‑1                                                                                                     TCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTAC                                                                                                                                   >  2:335336/1‑82                                                                                                                                                   CCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGG                                                                                                               <  2:326197/56‑1                                                                                                                                                   CCCTTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGG                                                                                                               >  1:326197/1‑56                                                                                                                                                      TTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTT              <  1:1491201/150‑1                                                                                                                                                      TTCGCGGGTAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTT              >  2:1977364/1‑150                                                                                                                                                         GCGGGTAAACACGATCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCA           >  2:1738485/1‑150                                                                                                                                                              TAAACCCGCTCCTGCGACGGGCTACTTCACCTTTGCAGGCGCGGGTTCACCCGCGAAGGGGCTGCGTGTGCTGTAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTG      <  1:1311191/150‑1                                                                                                                                                              TAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTc      <  1:1616418/150‑2                                                                                                                                                              TAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTG      <  1:1901174/150‑1                                                                                                                                                              TAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACT                                             <  1:1529453/111‑1                                                                                                                                                              TAAACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACT                                             >  2:1529453/1‑111                                                                                                                                                               aacCCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCC‑TCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGG    <  1:1623247/147‑1                                                                                                                                                                AACCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGG    <  2:603596/150‑1                                                                                                                                                                  CCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGTTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGGAA  >  1:2228299/1‑150                                                                                                                                                                  CCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGA                                                                 <  2:1555749/87‑1                                                                                                                                                                  CCCGCTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGA                                                                 >  1:1555749/1‑87                                                                                                                                                                                                                                                                                                                         GCCAAGGACCTGCCGGCGTTTCAGAAGCTGTATGACGAGCACCTGACCAGTATTCCCAATGTGAAACGCTTGAGCTCGACCTTGGTGATGAAGGAAGTGATCCAGGATCGGTTGCTCCCCATGTAGCTGTTTCCTCTTGTGCCGGCCCCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4149920‑4150085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggtaaacccgcTCCTGCGACGGGCTACGTCACCTTTGCAGGCGCGGGTTTACCCGCGAAGGGGCCGGCACAAGAGGAAACAGCTACATGGGGAGCAACCGATCCTGGATCACTTCCTTCATCACCAAGGTCGAGCTCAAGCGTTTCACATTGGGAA  <  NC_002947/4150116‑4149972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.