| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4233485 = | 96 (1.090) | 6 (0.070) | 5/232 | NT | 6.6% | intergenic (+118/+112) | PP_5626/PP_3711 | repressor‑like DNA‑binding domain‑containing protein/diguanylate cyclase |
| ? | NC_002947 | 4233506 = | 80 (0.970) | intergenic (+139/+91) | PP_5626/PP_3711 | repressor‑like DNA‑binding domain‑containing protein/diguanylate cyclase | |||||
ACCCGACCCGTGGCATGGTCATGCCGATGGACTTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGGCTTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4233640‑4233485‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctttgaCCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGC > NC_002947/4233506‑4233654 ACCCGACCCGTGGCATGGTCATGCCGATGGACTTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGG < 1:958779/150‑1ACCCGACCCGTGGCATGGTCATGCCGATGGACTTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGG > 2:1209476/1‑150ACCCGACCCGTGGCATGGTCATGCCGATGGACTTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTACTGCTCCTGCTTTAGGTCAAAGCCCCAAAGG > 2:1461874/1‑150 CCGACCCGTGGCATGGTCATGCCGATGGACTTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGGCT < 1:1030600/150‑1 CCCGTGGCATGGTCATGCCGATGGACTTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGGCTTTGA < 1:2277963/150‑1 TCATGCCGATGGACTTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGA < 1:1987119/150‑1 TTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGG < 1:1420398/118‑1 TTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGG > 2:1420398/1‑118 TACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGGCTTTGACCT > 1:837753/1‑110 TACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGGCTTTGACCT < 2:837753/110‑1 CCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGA > 1:1753467/1‑99 CCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCTTTGGGGCTTTGACCTAAAGCAGGA < 2:1753467/99‑1 ACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCTTTGGGGCTTTGACCTAAAGCA > 2:915636/1‑94 ACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCTTTGGGGCTTTGACCTAAAGCA < 1:915636/94‑1 ACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAG > 2:2328760/1‑67 ACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAG < 1:2328760/67‑1 TTTAGGTCAAAGCCCCAAAGGCTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGC < 2:1987119/150‑1 CTTTGACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGC < 2:1030600/150‑1 ACCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGC > 2:640523/1‑150 ACCCGACCCGTGGCATGGTCATGCCGATGGACTTCATTTTCTAGACACATACCCCTTCAGTGTCAAAACCCACAAGGTTTTGACTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTTTAGGTCAAAGCCCCAAAGGCTTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4233640‑4233485‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctttgaCCTAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGTCAAAACCTTGTGGGTTTTGACACTGAAGGGGTATGTGTCTAGAAAATGAAGTCCATCGGCATGACCATGCCACGGGTCGGGTGTTCCCAGCGCAGC > NC_002947/4233506‑4233654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |