New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4282145 =	106 (1.200)	7 (0.090)	7/224	NT	7.0%	intergenic (‑678/+40)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
	?	NC_002947	4282184 =	90 (1.130)					intergenic (‑717/+1)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator

GCAGAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4282305‑4282145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGT  >  NC_002947/4282184‑4282330                                                                                                                                                                                                                                                                                                                      GCAGAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATT                                                                                                                                                                <  2:371031/150‑1   AGAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAAGCACCGCGGTGGATGGCACCGGCAATGCTTGTTTTCGGGTGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGT                                                                                                                                                              >  1:524346/1‑150   AGAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGT                                                                                                                                                              >  2:104933/1‑150    GAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTCGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTA                                                                                                                                                             <  1:1299160/150‑1    GAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTA                                                                                                                                                             <  1:2142570/150‑1    GAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTA                                                                                                                                                             >  2:1260677/1‑150    GAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTA                                                                                                                                                             <  2:1596991/150‑1         CAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGC                                                                                                                                                        >  1:821597/1‑150            GGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGG                                                                                                                                                     >  1:470521/1‑150            GGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTATCCCCGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGG                                                                                                                                                     >  1:24087/1‑150                                                               ATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATT                                                                                                                                                                <  1:1549879/88‑1                                                               ATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATT                                                                                                                                                                >  2:1549879/1‑88                                                                                                            GTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGAC                                                          <  1:2096699/145‑1                                                                                                            GTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGAC                                                          >  2:2096699/1‑145                                                                                                                    GGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGG                                             >  1:1022477/1‑150                                                                                                                      GTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTA                                           >  2:2280148/1‑150                                                                                                                           CCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCC                                      >  2:791412/1‑150                                                                                                                            CCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCC                                                             <  2:1126207/126‑1                                                                                                                            CCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCC                                                             >  1:1126207/1‑126                                                                                                                                                      TGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGA           >  1:1485970/1‑150                                                                                                                                                         AGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACGTCTTGAACG        >  2:362292/1‑150                                                                                                                                                          ttcGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGTATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGC       >  1:1752926/4‑150                                                                                                                                                           GAGCGGGCTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCC      >  2:514215/1‑150                                                                                                                                                             GCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCC                                                <  1:341031/106‑1                                                                                                                                                             GCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCC                                                >  2:341031/1‑106                                                                                                                                                               GGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGT  <  1:1360132/150‑1                                                                                                                                                                                                                                                                                                                      GCAGAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4282305‑4282145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGT  >  NC_002947/4282184‑4282330

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.