New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4860170 =	112 (1.270)	6 (0.070)	6/248	NT	5.5%	coding (925/2331 nt)	ligA	DNA ligase
	?	NC_002947	4860218 =	94 (1.070)					coding (877/2331 nt)	ligA	DNA ligase

CCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4860214‑4860170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAGGC  >  NC_002947/4860218‑4860359                                                                                                                                                                                             CCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGACCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCC                                                                                >  1:396925/1‑109 CCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGACCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCC                                                                                <  2:396925/109‑1  CCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGACCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGA                                                >  1:1578115/1‑140  CCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGACCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGA                                                <  2:1578115/140‑1           GCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGACCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAG                             >  1:1819609/1‑150                                      CTGGGCGACCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAGGC  <  2:1819609/150‑1                                                                                                                                                                                             CCCAGCGCGAGCTGGGCTTCCGCGCCCGTGAGCCGCGCTGGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4860214‑4860170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGGCTGTTGACCTTGAACACTACCCCGTCGATCTCATACGGCAGGCTGTTACGCCGCTCGCCAATGTCGCGATAGTAGGCCAGGCACTCTTCGATGCCCGCCGCATGTTTGAGCTCGCGGCTGATCGGCAGGCCCCAGGC  >  NC_002947/4860218‑4860359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.