| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4950397 | 67 (0.760) | 19 (0.220) | 17/242 | NT | 22.5% | intergenic (‑9/+1) | fliM/fliL | flagellar biosynthesis switching/energizing protein/flagellar protein FliL |
| ? | NC_002947 | 5222979 = | NA (NA) | intergenic (‑342/+37) | PP_4602/PP_4603 | AraC family transcriptional regulator/transposase | |||||
CGCACGATACGGTCCTGACTGGTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4950246‑4950397‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGC > NC_002947/5222979‑5223126 CGCACGATACGGTCCTGACTGGTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGAC > 2:1361333/1‑150CGCACGATACGGTCCTGACTGGTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGAC < 2:2335874/150‑1 GCACGATACGGTCCTGACTGGTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACT > 1:1179834/1‑150 CACGATACGGTCCTGACTGGTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTC > 2:1051949/1‑150 ACGATACGGTCCTGACTGGTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCT > 1:2181860/1‑150 GGTCCTGACTGGTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACTGCCATTGCGGACTCCCATCAAA < 1:2067882/150‑1 GTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATC > 2:909655/1‑136 GTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATC < 1:909655/136‑1 CCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGC < 1:1404546/150‑1 GGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGC < 1:1681553/150‑1 TCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCC > 1:1966052/1‑150 TCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCC < 1:1051949/150‑1 CAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGG > 1:1234369/1‑150 GTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAA > 2:755653/1‑150 ACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAA > 2:1400230/1‑150 GCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAG > 1:1664611/1‑150 TGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGCTACCCCCGTTTCAGGGCATTGCCTTGCAAAGCCCG > 2:501261/1‑150 TGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGCCCG < 2:1966052/150‑1 TGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGCCCG < 1:501261/150‑1 TTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGTCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCAGGCCGTGCTGGTCTTGG > 2:130847/1‑150 TTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGG > 1:1034902/1‑150 TTCATCCTGTGACAGCAGGTCCTTTACGCCCATTGCGAAAAAAAAAAAAAAAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGC < 2:2181860/150‑1 AGGTCCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTC < 2:1878717/150‑1 CCTGTACGGCCATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCA < 1:1400230/150‑1 ATTGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCCGCGGCGCATCCTTCCGATATTGGGGTCTTGTTTCGAACTCCTCAAGACCTTGTTC > 2:61356/1‑150 TGCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAA < 2:1234369/150‑1 GCGGACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGTCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAAC < 1:130847/150‑1 CTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAG > 2:1363815/1‑150 CTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTT < 1:916443/108‑1 CTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTT > 2:916443/1‑108 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGC < 2:982268/150‑1 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGC < 2:2117799/150‑1 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGC < 2:2043335/150‑1 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGC > 2:1449357/1‑150 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTC > 1:1440452/1‑129 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCGGCCGGTCTTGGCTTCTGGTTTCGAACTCCTC < 2:1440452/129‑1 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGA < 2:2138171/95‑1 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGA > 1:2138171/1‑95 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCA > 2:725566/1‑38 TCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCA < 1:725566/38‑1 CTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTatt > 2:2117204/1‑103 CTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTC > 2:374202/1‑128 CTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTC < 1:374202/128‑1 CGCACGATACGGTCCTGACTGGTCAGGTCGTAGCTTTTGATACTGCCAGGCTCGGATGCACTCTCGGTCTGCACCAGCCCGTCGTCGACGCCATGCAACAGGGCATCGATTTCATCCTGGGACAGCAGGTCCTGTACGGCCATTGCGGACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4950246‑4950397‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGC > NC_002947/5222979‑5223126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |