New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5097307 =	72 (0.820)	4 (0.050)	4/236	NT	5.4%	intergenic (+250/+42)	PP_mr66/acsA‑I	P6/acetyl‑CoA synthetase
	?	NC_002947	5097321 =	73 (0.870)					intergenic (+264/+28)	PP_mr66/acsA‑I	P6/acetyl‑CoA synthetase

ATCGCCACCGGTGAGTACGACGCCCTGGGCGATATCTCGACCTTGGCTGACCCGGGTGTGGTACAGCACCTGATCGATACCCACAAGGCGATGAACCTGGCTTCGGCGTAAACCCTTCCCGGCAATACCCCCTGCAGGAGCGGGCTTGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5097459‑5097307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGCCAAGGTCGAGATATCGCCCAGGGCGTCGTACTCACCGGTGGCGATCTTGCGCA  >  NC_002947/5097321‑5097467                                                                                                                                                                                                                                                                                                              ATCGCCACCGGTGAGTACGACGCCCTGGGCGATATCTCGACCTTGGCTGACCCGGGTGTGGTACAGCACCTGATCGATACCCACAAGGCGATGAACCTGGCTTCGGCGTAAACCCTTCCCGGCAATACCCCCTGCAGGAGCGGGCTTGCC                                                                                                                                                        <  1:66100/150‑1  TCGCCACCGGTGAGTACGACGCCCTGGGCGATATCTCGACCTTGGCTGACCCGGGTGTGGTACAGCACCTGATCGATACCCACAAGGCGATGAACCTGGCTTCGGCGTAAACCCTTCCCGGCAATACCCCCTGCAGGAGCGGGCTTGCCC                                                                                                                                                       <  2:1238421/150‑1  TCGCCACCGGTGAGTACGACGCCCTGGGCGATATCTCGACCTTGGCTGACCCGGGTGTGGTACAGCACCTGATCGATACCCACAAGGCGATGAACCTGGCTTCGGCGTAAACCCTTCCCGGCAATACCCCCTGCAGGAGCGGGCTTGCCC                                                                                                                                                       <  2:1486486/150‑1          GGTGAGTACGACGCCCTGGGCGATATCTCGACCTTGGCTGACCCGGGTGTGGTACAGCACCTGATCGATACCCACAAGGCGATGAACCTGGCTTCGGCGTAAACCCTTCCCGGCAATACCCCCTGCAGGAGCGGGCAAGCCCGCTCCTGC                                                                                                                                               >  2:1189757/1‑150                            GGCGATATCTCGACCTTGGCTGACCCGGGTGTGGTACAGCACCTGATCGATACCCACAAGGCGATGAACCTGGCTTCGGCGTAAACCCTTCCCGGCAATACCCCCTGCAGGAGCGGGCAAGCCCGCTCCTGCAGGGGGTATTGCCGGGAA                                                                                                                             <  1:1189757/150‑1                                                                                 CCACAAGGCGATGAACCTGGCTTCGGCGTAAACCCTTCCCGGCAATACCCCCTGCAGGAGCGGGCAAGCCCGCTCCTGCAGGG                                                                                                                                           >  1:2197960/1‑83                                                                                 CCACAAGGCGATGAACCTGGCTTCGGCGTAAACCCTTCCCGGCAATACCCCCTGCAGGAGCGGGCAAGCCCGCTCCTGCAGGG                                                                                                                                           <  2:2197960/83‑1                                                                                                                                                    GCCCGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGCCAAGGTCGAGATATCGCCCAGGGCGTCGTACTCACCGGTGGCGATCTTGC     <  1:1134563/150‑1                                                                                                                                                       CGCTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGCCAAGGTCGAGATATCGCCCAGGGCGTCGTACTCACCGGTGGCGATCTTGCGCA  <  2:2106175/150‑1                                                                                                                                                                                                                                                                                                              ATCGCCACCGGTGAGTACGACGCCCTGGGCGATATCTCGACCTTGGCTGACCCGGGTGTGGTACAGCACCTGATCGATACCCACAAGGCGATGAACCTGGCTTCGGCGTAAACCCTTCCCGGCAATACCCCCTGCAGGAGCGGGCTTGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5097459‑5097307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcTCCTGCAGGGGGTATTGCCGGGAAGGGTTTACGCCGAAGCCAGGTTCATCGCCTTGTGGGTATCGATCAGGTGCTGTACCACACCCGGGTCAGCCAAGGTCGAGATATCGCCCAGGGCGTCGTACTCACCGGTGGCGATCTTGCGCA  >  NC_002947/5097321‑5097467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.