New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5164503	102 (1.160)	5 (0.060)	5/232	NT	5.1%	coding (3425/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	= 5164514	91 (1.100)					coding (3414/3906 nt)	hrpA	ATP‑dependent helicase HrpA

ACCAGGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCCAGCTGCCGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5164347‑5164503 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgctGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCACTGAACGACATCAAGC  <  NC_002947/5164514‑5164366                                                                                                                                                                                                                                                                                                                    ACCAGGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTGAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCACGCGCTCGGCATGCTCGGCCCAGCTG                                                                                                                                                              >  2:193994/1‑150      GTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCGCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTACCTTGCCAGGCGCTCGGCATGCTCGGCCCAGCTTCCGCa                                                                                                                                                         >  2:984202/1‑149                          TGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCCAGCTGCCGCGCTGGCTGAACGCAAGCGCGG                                                                                                                                     <  1:180495/150‑1                                                                           TTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCCAGCCGCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGG                                                                                                                              <  1:576289/108‑1                                                                           TTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCCAGCCGCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGG                                                                                                                              >  2:576289/1‑108                                                                                  AGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCCAGCTGCCGCGCTGGCTGAACGCAAGCGCGGCAGCTG                                                                                                                               >  1:722140/1‑100                                                                                  AGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCCAGCTGCCGCGCTGGCTGAACGCAAGCGCGGCAGCTG                                                                                                                               <  2:722140/100‑1                                                                                                                                                           GCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCAGTGGCACTGAACGACATCAA    >  1:913221/1‑150                                                                                                                                                             TGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCACTGAACGACATCAAGC  <  1:350817/150‑1                                                                                                                                                                                                                                                                                                                    ACCAGGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCCAGCTGCCGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5164347‑5164503 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgctGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCACTGAACGACATCAAGC  <  NC_002947/5164514‑5164366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.