New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 548519764 (0.730)5 (0.070) 4/196 NT 7.5% intergenic (+55/‑92) purH/purD bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
?NC_002947 = 5485219 72 (1.030)intergenic (+77/‑70) purH/purD bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase

GGGTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5485025‑5485197
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcttgcccgcgaatGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGATGACTTC  <  NC_002947/5485219‑5485071
                                                                                                                                                                                                                                                                                                                                  
GGGTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTG                                                                                                                                                                              >  2:1279936/1‑150
GGGTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTG                                                                                                                                                                              >  1:1165593/1‑150
 GGTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGT                                                                                                                                                                             >  1:111709/1‑150
 GGTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGT                                                                                                                                                                             <  2:2038007/150‑1
 GGTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGT                                                                                                                                                                             <  1:1343250/150‑1
  GTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTG                                                                                                                                                                            <  1:938470/150‑1
  GTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTG                                                                                                                                                                            <  2:2165810/150‑1
  GTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTG                                                                                                                                                                            <  1:2048720/150‑1
   TATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGG                                                                                                                                                                           <  2:740496/150‑1
   TATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACAAGGACGCCGTTGTGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGG                                                                                                                                                                           <  1:283203/150‑1
       AGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGC                                                                                                                                                                       >  2:1097205/1‑150
             GTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTT                                                                                                                                                                 >  2:481573/1‑150
                ATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCC                                                                                                                                                              <  1:88031/150‑1
                ATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCC                                                                                                                                                              >  1:58944/1‑150
                   CAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCCCGC                                                                                                                                                           <  1:897624/150‑1
                        GGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTG                                                                                                                                                                              <  1:1638207/126‑1
                        GGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTG                                                                                                                                                                              >  2:1638207/1‑126
                                                     TCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGG                                                                                                                         <  2:1112567/150‑1
                                                                GACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGG                                                                                                                                                                           >  1:1976170/1‑89
                                                                GACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGG                                                                                                                                                                           <  2:1976170/89‑1
                                                                                             TGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGC                                                                                                                                                                       >  2:462189/1‑64
                                                                                             TGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGC                                                                                                                                                                       <  1:462189/64‑1
                                                                                                              cCCACTAAGTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGG                                                                                                                         <  1:2026782/92‑1
                                                                                                              GCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGG                                                                                                                         >  2:2026782/1‑93
                                                                                                                          GCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGC                                                                                                                           >  1:582501/1‑79
                                                                                                                          GCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGC                                                                                                                           <  2:582501/79‑1
                                                                                                                                                   CTGTGGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGG                           >  1:1928768/1‑150
                                                                                                                                                    TGTGGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAAT                                                                         >  2:1806021/1‑103
                                                                                                                                                    TGTGGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAAT                                                                         <  1:1806021/103‑1
                                                                                                                                                      TGGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCT                        >  2:58944/1‑150
                                                                                                                                                       GGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTC                       <  1:25240/150‑1
                                                                                                                                                       GGGAGCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGATTTCCACTGAAGACCATCGCGATGCCGGCCTC                       <  1:60665/150‑1
                                                                                                                                                           GCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGAC                                         <  2:1506712/128‑1
                                                                                                                                                           GCGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGAC                                         >  1:1506712/1‑128
                                                                                                                                                            CGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTTGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGG                  >  2:1874048/1‑150
                                                                                                                                                            CGGGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCCGGATCCGAGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGG                  >  1:631121/1‑150
                                                                                                                                                              cGCTTGCCCACGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCA                <  1:762485/149‑1
                                                                                                                                                              GGCTTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCCTGCCAGTGAAGACCATCGCGATGCAGGCCTCGTAGGCA                >  2:111709/1‑150
                                                                                                                                                                 TTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCA             >  1:1097205/1‑150
                                                                                                                                                                 TTGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCA             >  1:1078019/1‑150
                                                                                                                                                                  TGCCCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAG            <  1:543133/150‑1
                                                                                                                                                                     CCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGA         >  1:481573/1‑150
                                                                                                                                                                     CCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGA         >  1:1279936/1‑150
                                                                                                                                                                     CCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGT                                               >  1:66841/1‑112
                                                                                                                                                                     CCGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGT                                               <  2:66841/112‑1
                                                                                                                                                                      CGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGAT        >  2:1165593/1‑150
                                                                                                                                                                      CGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGAT        <  1:1336838/150‑1
                                                                                                                                                                      CGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGAC                                                                                              >  1:78038/1‑64
                                                                                                                                                                      CGCGAATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGAC                                                                                              <  2:78038/64‑1
                                                                                                                                                                          AATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGATGACT    >  1:437554/1‑150
                                                                                                                                                                          AATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCG                            >  2:127103/1‑126
                                                                                                                                                                          AATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCG                            <  1:127103/126‑1
                                                                                                                                                                           ATGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGATGACTT   <  2:1855944/150‑1
                                                                                                                                                                            TGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGATGACTTC  <  1:657389/150‑1
                                                                                                                                                                            TGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGATGACTTC  <  2:687737/150‑1
                                                                                                                                                                                                                                                                                                                                  
GGGTATCAGCGCCGTGATCCAGCCGGGTGGTTCGATGCGTGATGCTGAAGTCATCGCTGCTGCCGACGAGGCCGGCATCGCGATGGTCTTCACTGGCATGCGCCACTTCCGCCACTAATTACGCGGATCCCGAGGCAAGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5485025‑5485197
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcttgcccgcgaatGCGGCGGTGAATCCACCATCGTATTCGCGGGCAAGCCCGCTCCCACAGGATCTCGACTTGCCTCGGGATCCGCGTAATTAGTGGCGGAAGTGGCGCATGCCAGTGAAGACCATCGCGATGCCGGCCTCGTCGGCAGCAGCGATGACTTC  <  NC_002947/5485219‑5485071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.