New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5506609 =	91 (1.030)	12 (0.180)	11/190	NT	19.6%	intergenic (+20/‑179)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	5506680 =	29 (0.430)					intergenic (+91/‑108)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease

GCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5506785‑5506609 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC  >  NC_002947/5506680‑5506826                                                                                                                                                                                                                                                                                                                                       GCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGT                                                                                                                                                                                >  2:2136995/1‑150           TCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCCCCTACAACGCGGTC‑CCTCGTAGGAGCGGGg                                                                                                                                                                      >  2:1640439/1‑149             TTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGG                                                                                                                                                                        >  1:1617479/1‑146             TTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGG                                                                                                                                                                        <  2:1617479/146‑1               GTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCTGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTAC                                                                                                                                                                  >  1:1866280/1‑150                 CAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCC                                                                                                                                                                <  1:1869588/150‑1                   GAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGC                                                                                                                                                              <  2:1187700/150‑1                    AGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGG                                                                                                                                                                       >  1:1030646/1‑140                    AGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGG                                                                                                                                                                       <  2:1030646/140‑1                               TAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTT                                                                                                                                                                    >  2:656482/1‑132                               TAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTT                                                                                                                                                                    <  1:656482/132‑1                                          GCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑GGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAAT                                                                                                                                       <  1:854326/150‑1                                                  CAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                      <  1:1350563/127‑1                                                  CAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGC                                                                                                                                                      >  2:1350563/1‑127                                                    GATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGG                                                                                                                                                                       >  1:1056334/1‑108                                                    GATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGG                                                                                                                                                                       <  2:1056334/108‑1                                                                                                                       GGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTG                                                                                            <  1:1158819/116‑1                                                                                                                       GGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTG                                                                                            >  2:1158819/1‑116                                                                                                                            ACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAAC                                                                                        >  2:752418/1‑115                                                                                                                            ACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAAC                                                                                        <  1:752418/115‑1                                                                                                                             CCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGA                                                                                                               >  2:936981/1‑91                                                                                                                             CCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGA                                                                                                               <  1:936981/91‑1                                                                                                                              CCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAG                                                   >  2:428813/1‑150                                                                                                                              CCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAG                                                   >  2:203026/1‑150                                                                                                                               CGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGA                                                  <  1:428813/150‑1                                                                                                                                      ACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGC                                                                                                                                >  2:1905618/1‑65                                                                                                                                      ACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGC                                                                                                                                <  1:1905618/65‑1                                                                                                                                                    TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAAC                              <  1:203026/150‑1                                                                                                                                                         GGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCAC                         >  2:1528985/1‑150                                                                                                                                                          GAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGTGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTA                                                                         >  2:495475/1‑101                                                                                                                                                          GAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGTGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTA                                                                         <  1:495475/101‑1                                                                                                                                                            GCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCA                                             <  1:2031590/127‑1                                                                                                                                                            GCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCA                                             >  2:2031590/1‑127                                                                                                                                                              GGGTTTACCCGCGAAGAGGCCAGCACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCATCCTATGACGCAAACCTCACCCATA                    <  2:854326/150‑1                                                                                                                                                                      CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGA            >  2:1426619/1‑150                                                                                                                                                                      CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGC                                                                                    <  1:2048118/78‑1                                                                                                                                                                      CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGC                                                                                    >  2:2048118/1‑78                                                                                                                                                                      CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACACGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGA            >  1:1908595/1‑150                                                                                                                                                                      CCGCGAAGAGGCCAGCACAGGCGAAATGATGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGC                                           >  1:1972042/1‑119                                                                                                                                                                      CCGCGAAGAGGCCAGCACAGGCGAAATGATGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGC                                           <  2:1972042/119‑1                                                                                                                                                                          GAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAA        <  1:1187700/150‑1                                                                                                                                                                           AAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAAC       <  1:1647635/150‑1                                                                                                                                                                           AAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAAC       <  1:692334/150‑1                                                                                                                                                                            AGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACC      <  1:107607/150‑1                                                                                                                                                                            AGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACC      <  1:107934/150‑1                                                                                                                                                                             GAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCA                      <  1:1025540/133‑1                                                                                                                                                                             GAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCA                      >  2:1025540/1‑133                                                                                                                                                                                GCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTCGAGCTGTACCTCTGACAAGAAGACTGCAGCCTATGACACAAACCTCACCCATAGCGACAGATGAACCGCAC  >  1:145793/1‑150                                                                                                                                                                                GCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC  <  1:1528985/150‑1                                                                                                                                                                                GCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC  >  2:1034522/1‑150                                                                                                                                                                                GCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC  >  1:2173788/1‑150                                                                                                                                                                                                                                                                                                                                       GCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5506785‑5506609 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC  >  NC_002947/5506680‑5506826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.