New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5571458 = | 106 (1.200) | 5 (0.060) | 4/220 | NT | 5.6% | intergenic (+29/+112) | queG/yicG | epoxyqueuosine reductase/inner membrane protein |
? | NC_002947 | 5571543 = | 74 (0.950) | intergenic (+114/+27) | queG/yicG | epoxyqueuosine reductase/inner membrane protein |
TCCGCTTCCACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5571619‑5571458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacaTGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCAACATCGCCTGTTCTGCCGGCACCTTGAA > NC_002947/5571543‑5571689 TCCGCTTCCACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCG > 2:1204420/1‑150 TTCCACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGC > 1:180397/1‑150 CACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCC > 1:543041/1‑150 CACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCC > 1:2302967/1‑150 CTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCA > 1:949495/1‑150 TGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCAC > 1:2033233/1‑150 TGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCACGCGGCCACGGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCAC < 2:902557/150‑1 GCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGC > 1:1256389/1‑132 GCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGC < 2:1256389/132‑1 CCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTC > 2:1678539/1‑136 CCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTC < 1:1678539/136‑1 CCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCC > 2:1854390/1‑112 CCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCC < 1:1854390/112‑1 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGTGTCACCGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGG > 2:1631962/1‑150 GTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGAT > 1:452080/1‑150 CCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGC > 1:642372/1‑150 ACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGTGTCACCGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGG < 1:1631962/150‑1 TTCGCGGGCCCGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGNTNGCCAACNGGCGCACCAGGANGCCGCCAAACAGTGTGAGCAACATNGC < 1:1524682/150‑1 CGCCCGCTCCCACATGGGCTATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCAACATCGCCTGTTCTGCC < 2:1533137/150‑1 CGCCCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCAACATCGCCTGTTCTGCC < 2:1712993/150‑1 CCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAG < 1:2277995/98‑1 CCGCTCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAG > 2:2277995/1‑98 TCCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCAACATCGCCTGTTCTGCCGGCACCT > 2:1378547/1‑150 CCCACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATCGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCAACATCGCCTGTTCTGCCGGCACCTT < 1:2120474/150‑1 CACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCAACATCGCCTGTTCTGCCGGCACCTTGA < 2:642372/150‑1 ACATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCGACATCGCCTGTTCTGCCGGCACCTTGAA < 1:2169394/150‑1 CATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCAACATCGCCTGTTCTGCCGGCACCTTGA > 1:88315/1‑148 CATGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCAACATCGCCTGTTCTGCCGGCACCTTGA < 2:88315/148‑1 TCCGCTTCCACTGGGAAATGCCCAAGTTCCACTACAACGACCAGCAGTGACGCAATTTACAAGCGCAACATGGCCCATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCATTCCCTGTGTTGCCTGCTTCGCGGGCGCGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5571619‑5571458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacaTGGGCCATGTTGCGCTTGTAAATTGCGTCACTGCTGGTCGTTGTAGTGGAACTTGGGCATTTCCCAGTGGAAGCGGATTGCCAACAGGCGCACCAGGAAGCCGCCAAACAGTGTGAGCAACATCGCCTGTTCTGCCGGCACCTTGAA > NC_002947/5571543‑5571689 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |