New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5594170	55 (0.620)	7 (0.100)	6/192	NT	11.6%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5594207	64 (0.940)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

CATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5593994‑5594170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcttgcccgcgaaGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATC  <  NC_002947/5594207‑5594060                                                                                                                                                                                                                                                                                                                                       CATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCA                                                                                                                                                                                 >  1:2189661/1‑150 CATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCA                                                                                                                                                                                 >  2:1383939/1‑150  ATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCAC                                                                                                                                                                                >  2:1517631/1‑150   TCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACC                                                                                                                                                                               <  2:2080751/150‑1    CAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCC                                                                                                                                                                              <  2:1336219/150‑1       GCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGT                                                                                                                                                                           <  2:1866877/150‑1        CCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTTGATTGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTG                                                                                                                                                                          <  2:902027/150‑1            tggCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCC                                                                                                                                                                              >  1:2331119/4‑142            tggCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCC                                                                                                                                                                              <  2:2331119/139‑1              CCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGT‑GGAGCGG                                                                                                                                                                   <  1:1517631/150‑1               CGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGG                                                                                                                                                                   <  2:339643/150‑1                GAGGGAAAACCACAGTGAAAACAGGTCGCGAGCATCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGG                                                                                                                                                                  <  1:891484/150‑1                GAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGG                                                                                                                                                                  >  2:921011/1‑150                  GGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCT                                                                                                                                                                <  2:836452/150‑1                   GGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTT                                                                                                                                                               <  1:1585848/150‑1                     AAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGC                                                                                                                                                             >  1:398015/1‑150                     AAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                         <  2:1183467/138‑1                     AAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                         >  1:1183467/1‑138                       AACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCC                                                                                                                                                           <  1:954268/150‑1                         CCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGC                                                                                                                                                         <  1:526855/150‑1                         CCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGC                                                                                                                                                         >  1:1928545/1‑150                         CCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGC                                                                                                                                                         <  2:398015/150‑1                          CACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCG                                                                                                                                                        >  1:1829815/1‑150                            ccGTGAAAACAGGTCGCGAGCACCGCAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGATAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAc                                                                                                                                                      <  1:921011/148‑2                                        GTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                         >  2:2070461/1‑119                                        GTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                         <  1:2070461/119‑1                                         TCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTT                                                                                                                                                               >  2:811310/1‑128                                         TCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTT                                                                                                                                                               <  1:811310/128‑1                                            CGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                         <  2:878575/115‑1                                            CGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGG                                                                                                                                                                         >  1:878575/1‑115                                                                        GGATTGGATGGTCGGGAGAGAACTGGCTGGGTGCTGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG                                                                                                             >  1:1939590/1‑147                                                                        GGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG                                                                                                             <  2:1939590/147‑1                                                                            TGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAA                                                                                                      <  1:1383939/150‑1                                                                                            AACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGC                                                                                                                                                         <  2:1296581/83‑1                                                                                            AACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGC                                                                                                                                                         >  1:1296581/1‑83                                                                                                                  TCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                          >  2:1399133/1‑108                                                                                                                  TCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                          <  1:1399133/108‑1                                                                                                                          GCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                          >  2:793083/1‑100                                                                                                                          GCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                          <  1:793083/100‑1                                                                                                                                                       CCCTGTGGGAGCGGGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTT                           <  1:620362/150‑1                                                                                                                                                                    GGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAA                                                                                                      <  2:2049050/62‑1                                                                                                                                                                    GGCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAA                                                                                                      >  1:2049050/1‑62                                                                                                                                                                     GCTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATC             <  2:1990514/150‑1                                                                                                                                                                          CCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCAC                                                                         <  2:2149062/85‑1                                                                                                                                                                          CCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCAC                                                                         >  1:2149062/1‑85                                                                                                                                                                           CCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGAC                                          <  1:894561/115‑1                                                                                                                                                                           CCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGAC                                          >  2:894561/1‑115                                                                                                                                                                           CCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCC                                                                                                  <  1:15508/59‑1                                                                                                                                                                           CCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCC                                                                                                  >  2:15508/1‑59                                                                                                                                                                            CGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCAT                                             <  2:1207990/111‑1                                                                                                                                                                            CGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCAT                                             >  1:1207990/1‑111                                                                                                                                                                             GCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCC     >  2:244034/1‑150                                                                                                                                                                              CGAAGCAAGCACCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCA    >  1:2161848/1‑150                                                                                                                                                                                AAGCAAGCGCTGCGGTGCATGGCACCGGCTTTGCCGCACTTCCCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATC  <  1:21663/150‑1                                                                                                                                                                                                                                                                                                                                       CATCAGGCCGATGCCGAGGGAAAACCACAGTGAAAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5593994‑5594170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgtgggagcgggcttgcccgcgaaGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGGTGGTGTATGCCACTTAACATCACTCCTGCGGACATGACCATGACATCACCCAGCCAGTTCTCTCCCGACCATCCAATCCCCATC  <  NC_002947/5594207‑5594060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.