New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5671666 = | 39 (0.440) | 4 (0.060) | 4/200 | NT | 10.3% | intergenic (+34/‑136) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein |
? | NC_002947 | 5671751 = | 38 (0.540) | intergenic (+119/‑51) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein |
GCAGCAGGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5671838‑5671666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGACTGGGC > NC_002947/5671751‑5671899 GCAGCAGGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCT < 1:2211486/150‑1 AGCAGGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTC > 1:1944811/1‑150 CAGGATCAAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGC > 2:1405505/1‑150 GGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG < 2:713669/150‑1 GGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCCGGTTGCTCTCTTCGCGG < 2:514288/150‑1 GGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGCGCCCGCGAACACCGGCCAAGCCGTTGCCAACGATCGGGTTGCTCTCTTCGCGG > 2:307308/1‑150 GGATCAAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG < 1:1405505/150‑1 GATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGG < 1:1264422/150‑1 CCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCAC < 2:1709307/150‑1 CAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACG > 1:1406849/1‑150 CAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACG > 1:2039486/1‑150 AGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGC < 2:870421/150‑1 AACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCC < 2:203117/150‑1 ACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCC < 2:2071104/150‑1 ACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCC < 2:1956472/150‑1 ACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCC < 1:1750654/150‑1 GGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCA > 2:1955426/1‑150 TGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG < 1:17870/120‑1 TGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG > 2:17870/1‑120 CGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCG < 1:2092150/115‑1 CGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCG > 2:2092150/1‑115 GGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG > 2:189418/1‑115 GGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG < 1:189418/115‑1 GCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCC < 1:2315476/114‑1 GCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCC > 2:2315476/1‑114 GGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG < 2:460247/100‑1 GGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGG > 1:460247/1‑100 TGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTA > 2:2245493/1‑95 TGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTA < 1:2245493/95‑1 CCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATC > 1:288824/1‑150 GCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTT < 2:288824/150‑1 GGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCT > 1:1038307/1‑150 GGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTG < 1:2182636/150‑1 ACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCG > 2:749538/1‑63 ACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCG < 1:749538/63‑1 ccgatCTCCCACATCGAAAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATCCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAAC < 2:815223/145‑1 CCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACGCCAGAATGAAGGGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACC > 2:1833990/1‑150 CCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCG > 2:1503810/1‑150 CCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCG > 1:1668578/1‑150 TCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGACTGGTAACCGCCGA < 2:2144478/150‑1 CCACATCGATAATGCATGCCTTTACCGTACCCCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGAat < 1:1503810/150‑3 CCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCT > 1:347792/1‑103 CCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCT < 2:347792/103‑1 ACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGACagg > 1:2200406/1‑147 ACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTT > 2:1106341/1‑110 ACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTT < 1:1106341/110‑1 ATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGACTGGGC < 1:203117/150‑1 GCAGCAGGATCCAGAACAGACGGGCGATATGTGGCATGGCCGGAGATTACGCGCTCGGCCGGTGTACGGTAAAGGCATGCATTATCGATGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5671838‑5671666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGACTGGGC > NC_002947/5671751‑5671899 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |