| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5786528 = | 76 (0.860) | 8 (0.110) | 7/200 | NT | 13.1% | intergenic (+15/‑116) | PP_5068/trxC | hypothetical protein/thioredoxin |
| ? | NC_002947 | 5786613 = | 45 (0.630) | intergenic (+100/‑31) | PP_5068/trxC | hypothetical protein/thioredoxin | |||||
GGCGGTTGAGGCCGTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5786695‑5786528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcacgcccgctcccacaAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGTTGAGCA > NC_002947/5786613‑5786761 GGCGGTTGAGGCCGTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCG > 2:1479456/1‑150 GCGGTTGAGGCCGTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG < 2:659475/150‑1 GCGGTTGAGGCCGTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATGTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGG < 1:1908699/150‑1 GTTGAGGCCGTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCA < 1:1380486/150‑1 GGCCGTTGCAGTGGTGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCC < 2:1455344/150‑1 GCCGTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCG > 2:172859/1‑150 GCCGTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGC < 1:470737/147‑1 GCCGTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGC > 2:470737/1‑147 GTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTC < 1:1714070/150‑1 AGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACA < 1:1024080/150‑1 AGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACA < 1:1749947/150‑1 AGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACA < 1:1547826/150‑1 ATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGG < 2:670916/97‑1 ATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGG > 1:670916/1‑97 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTC > 2:103445/1‑150 GCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTC > 1:1655396/1‑150 GTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAA > 1:1489527/1‑150 CCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGG > 2:94387/1‑115 CCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGG < 1:94387/115‑1 GCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCG < 2:1768937/89‑1 GCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCG > 1:1768937/1‑89 GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGA < 1:103445/150‑1 TCGCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGC > 2:1740148/1‑150 GCGGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAA > 2:1131971/1‑150 GGGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAA > 1:880524/1‑150 GGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAA < 2:827255/150‑1 GGCACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCACCACTGCAACGGCCTCCACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAA < 1:1455344/150‑1 ACGCCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGA > 1:88091/1‑150 CCCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGT < 2:1547826/150‑1 CCGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTG > 1:929330/1‑150 CGCTCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCACCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGC > 1:814629/1‑150 TCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCGGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGT < 2:1018826/150‑1 TCCCACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCGGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGT > 1:1018826/1‑150 CACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGTTGA > 1:2207184/1‑150 CACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGTTGA > 1:823366/1‑150 ACAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCTCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGTTGAG > 2:1296228/1‑150 CAAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGTTGAGC < 1:297745/150‑1 AAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGAT > 2:1588448/1‑137 AAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGAT < 1:1588448/137‑1 AAGGAAACCGTGAACCCAACACCAGAGAAGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGAAAAAAAAAAAAAAAGGATGTGCTGTTGAGCA < 2:2224004/150‑1 GGCGGTTGAGGCCGTTGCAGTGGGGGCAGGGGATTACCAGTGGGTCGGTCATTTCATCTCCGGTGTTGGGTTCACGGTTTCCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5786695‑5786528‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggcacgcccgctcccacaAGGAAACCGTGAACCCAACACCGGAGATGAAATGACCGACCCACTGGTAATCCCCTGCCCCCACTGCAACGGCCTCAACCGCCTGCCCGCCGAGCGCCTGGGCGATGCGCCGAAATGCGGTCGCTGCAAAAAGGATGTGCTGTTGAGCA > NC_002947/5786613‑5786761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |