New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5903842	65 (0.740)	4 (0.050)	3/216	NT	6.4%	intergenic (+42/+65)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	= 5903870	60 (0.780)					intergenic (+70/+37)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease

CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5903678‑5903842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAA  <  NC_002947/5903870‑5903727                                                                                                                                                                                                                                                                                                                       CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATG                                                                                                                                                                 >  1:2168755/1‑150 CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAG‑CCTGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCACGC                                                                                                                                                                <  1:1926479/150‑1  ATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGTGGGCATGC                                                                                                                                                                <  1:1116948/150‑1     CGCTGCGGCAGGAAGAGTGTCTGGTTCCTGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCCGGAGCCTTCGCGGGCATGCCCG                                                                                                                                                             <  2:94579/150‑1           GGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCA                                                                                                                                                       <  1:2296225/150‑1               GGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGG                                                                                                                                                   <  2:1620880/150‑1                GAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGACTCGGTGCTGGAGCCTTCGCGTGCATGCCCGCTCCCACAGGG                                                                                                                                                  <  2:24341/150‑1                GAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG                                                                                                                                                  <  1:1982969/150‑1                                                    GCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                              <  2:46080/150‑1                                                      CAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGCGGGA                                                                                                            <  2:1562167/150‑1                                                       AATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGG                                                                                                                                                   >  1:2103927/1‑110                                                       AATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGG                                                                                                                                                   <  2:2103927/110‑1                                                           CCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCgaa                                                                                                                                                         <  1:1988570/100‑4                                                           CCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCgaa                                                                                                                                                         >  2:1988570/1‑97                                                                         TTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                              >  2:640413/1‑129                                                                         TTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG                                                                                                              <  1:640413/129‑1                                                                                                   ACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTC                                                                                                                                                          >  2:613513/1‑59                                                                                                   ACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTC                                                                                                                                                          <  1:613513/59‑1                                                                                                                                                      GCCCGGTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGGCCTGGGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAG            <  2:1703500/150‑1                                                                                                                                                      GCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAG            <  2:1734991/150‑1                                                                                                                                                        CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTC               <  2:170013/145‑1                                                                                                                                                        CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTC               >  1:170013/1‑145                                                                                                                                                        CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGAT                                                                            <  2:284700/84‑1                                                                                                                                                        CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGAT                                                                            >  1:284700/1‑84                                                                                                                                                         CGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCAC                                                                                >  2:2038614/1‑79                                                                                                                                                         CGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCAC                                                                                <  1:2038614/79‑1                                                                                                                                                            TCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCCTGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTG      <  2:2068298/150‑1                                                                                                                                                             CCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGG     <  2:2190819/150‑1                                                                                                                                                              CCACAGGGCCCTCCCAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTTACCAATCCAGCCCTCAAGGGATTGGC    >  2:733644/1‑150                                                                                                                                                                ACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAA  >  2:537429/1‑150                                                                                                                                                                  AGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAA                                                      <  2:1053958/96‑1                                                                                                                                                                  AGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAA                                                      >  1:1053958/1‑96                                                                                                                                                                                                                                                                                                                       CATGCGCTGCGGCAGGAAGAGTGTGTGGTTCATGTAGCCCGGTACATTGTTGCCAATCCCTTGAGGGCTGGATTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5903678‑5903842 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacagggACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGCTCCAGCACCGATTCAAAGCCATACCGCATCCCAATGTGGATAGTCCCTGATACTTCTGACCAATCCAGCCCTCAAGGGATTGGCAA  <  NC_002947/5903870‑5903727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.