| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6141501 = | 103 (1.170) | 5 (0.060) | 4/230 | NT | 5.0% | coding (1181/3159 nt) | cusA | CzcA family RND family copper transporter |
| ? | NC_002947 | 6141541 = | 95 (1.160) | coding (1221/3159 nt) | cusA | CzcA family RND family copper transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACCTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6141658‑6141501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgccgcTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTGGCACGCCCGTTATCCTGGGCAGGTTCTGCGTGGTGCCGAGCACTGGCGGGTCATGACAGATGCGGCGGTGGAGGTCGGCCCGGCGCTGTTCTTCAGCCTGATGATC > NC_002947/6141541‑6141688 GACCTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGAGCCAATGGCG‑‑ATGG‑C > 2:1626574/1‑150 CCTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGA < 1:1002078/150‑1 CCTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGA < 1:2195806/150‑1 CTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTCTGCGAG‑TCCCGATGCATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGAT > 2:1230074/1‑150 CTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGAT < 1:1381513/150‑1 CTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGAT > 2:492299/1‑150 CTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGAT > 2:1381513/1‑150 CTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTCCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGAT > 2:654966/1‑150 TCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATG > 1:1558806/1‑150 TCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATG > 1:1064274/1‑150 ACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCG > 2:2187868/1‑150 ACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAACGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCG > 2:2265322/1‑150 TGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCG‑CCAT‑‑CGCCATTGGCGCAATGGTCGATGCCGCTGTGGTGATGATCGA < 1:1604811/150‑1 AAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATG > 1:537037/1‑77 AAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATG < 2:537037/77‑1 GCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCTGTGGTGATGATCGAGAACGCGCATAAAC > 2:2056433/1‑66 GCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCTGTGGTGATGATCGAGAACGCGCATAAAC < 1:2056433/66‑1 ATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTGGCACGCCCGTTATCCTGGGCAGGTTCTGCGTGGTGCCGAGCACTGGCGGGTCATGACAGATGCGGCGGTGGAc < 2:1604811/150‑2 TCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTGGCACGCCCGTTATCCTGGGCAGGTTCTGCGTGGTGCCGAGCACTGGCGGGTCATGACAGATGCGGCGGTGGAGG > 2:1398101/1‑150 GATGCCGCTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTGGCACGCCCGTTATCCTGGGCAGGTTCTGCGTGGTGCCGAGCACTGGCGGGTCATGACAGATGCGGCGGTGGAGGTCGGCCCGGCGCTGTTCTTCAGCCTG > 2:2281176/1‑150 CGCTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTGGCACGCCCGTTATCCTGGGCAGGTTCTGCGTGGTGCCGAGCACTGGCGGGTCATGACAGATGCGGCGGTGGAGGTCGGCCCGGCGCTGTTCTTCAGCCTGATGAT > 2:1434717/1‑150 CGCTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTGGCACGCCCGTTATCCTGGGCAGGTTCTGCGTGGTGCCGAGCACTGGCGGGTCATGACAGATGCGGCGGTGGAGGTCGGCCCGGCGCTGTTCTTCAGCCTGATGAT > 1:2091222/1‑150 CGCTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTG > 1:654286/1‑45 CGCTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTG < 2:654286/45‑1 GCTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTGGCACGCCCGTTATCCTGGGCAGGTTCTGCGTGGTGCCGAGCACTGGCGGGTCATGACAGATGCGGCGGTGGAGGTCGGCCCGGCGCTGTTCTTCAGCCTGATGATC < 1:162718/150‑1 GCTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTGGCACGCCCGTTATCCTGGGCAGGTTCTGCGTGGTGCCGAGCACTGGCGGGTCATGACAGATGCGGCGGTGGAGGTCGGCCCGGCGCTGTTCTTCAGCCTGATGATC < 1:1485999/150‑1 GACCTCCACCGCCGCATCTGTCATGACCCGCCAGTGCTCGGCACCACGCAGAACCTGCCCAGGATAACGGGCGTGCCAAGCTTCAACCCGTTTATGCGCGTTCTCGAT‑CATCACCACAGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6141658‑6141501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgccgcTGTGGTGATGATCGAGAACGCGCATAAACGGGTTGAAGCTTGGCACGCCCGTTATCCTGGGCAGGTTCTGCGTGGTGCCGAGCACTGGCGGGTCATGACAGATGCGGCGGTGGAGGTCGGCCCGGCGCTGTTCTTCAGCCTGATGATC > NC_002947/6141541‑6141688 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |