New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2226811	41 (0.460)	5 (0.060)	5/240	NT	10.6%	coding (634/804 nt)	PP_1964	dGMP/dTMP/dhydroxyCMP kinase
	?	NC_002947	= 2226824	45 (0.530)					coding (621/804 nt)	PP_1964	dGMP/dTMP/dhydroxyCMP kinase

CAAGCGGATTCAACCTTTTTTCTTAGTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGAAAGTCTCGCGA  >  NC_002947/2226663‑2226958                                                                                                                                                     |                                                                                                                                                     cAAGCGGATTCAACCTTTTTTCTTAGTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTa                                                                                                                                                     >  1:1109971/1‑150 (MQ=255)  aaGCGGATTCAACCTTTTTTCTTAGTTCTTCGATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTAt                                                                                                                                                    >  2:1436516/1‑150 (MQ=255)  aaGCGGATTCAACCTTTTTTCTTAGTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTAt                                                                                                                                                    <  1:1420257/150‑1 (MQ=255)    gCGGATTCAACCTTTTTTCTTAGTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATgg                                                                                                                                                  <  2:1078016/150‑1 (MQ=255)                  ttttCTTAGTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGc                                                                                                                                   >  2:946383/1‑150 (MQ=255)                    ttCTTAGTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTctggcgcagccataatggag                                                                                                                                  <  1:1135866‑M1/150‑21 (MQ=255)                     tCTTAGTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCCATTCCATCTTCTGAAAGTTGGGATTGGACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGc                                                                                                                                >  1:1451360/1‑150 (MQ=255)                       ttAGTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCtt                                                                                                                              >  2:868271/1‑150 (MQ=255)                          gTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGTATTGTACTTTTATTGCATTGTTGCGATTGATATGGCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGt                                                                                                                           >  2:928752/1‑150 (MQ=255)                                  aTTGTATCATTGTTTTCGATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCatat                                                                                                                   >  1:1986845/1‑150 (MQ=255)                                   ttGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATc                                                                                                                  <  1:946383/150‑1 (MQ=255)                                           ttGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATcc                                                                                                          >  1:1770475/1‑150 (MQ=255)                                           ttGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATcc                                                                                                          >  2:296423/1‑150 (MQ=255)                                           ttGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATcc                                                                                                          >  1:359061/1‑150 (MQ=255)                                             gTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCtt                                                                                                        <  2:359061/150‑1 (MQ=255)                                               tttCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCGAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTtaa                                                                                                      >  1:751878/1‑150 (MQ=255)                                                    aTTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATg                                                                                                 >  2:522888/1‑150 (MQ=255)                                                      tGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCt                                                                                                                 <  2:928015/132‑1 (MQ=255)                                                      tGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCt                                                                                                                 >  1:928015/1‑132 (MQ=255)                                                      tGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGaa                                                                                               >  1:2034044/1‑150 (MQ=255)                                                                   ttGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCa                                                                                  <  2:1451360/150‑1 (MQ=255)                                                                            tCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCAttt                                                                         >  2:2002415/1‑150 (MQ=255)                                                                            tCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCAttt                                                                         >  2:1571880/1‑150 (MQ=255)                                                                              aaTTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGt                                                                       <  1:868271/150‑1 (MQ=255)                                                                               aTTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGtt                                                                      <  2:1109971/150‑1 (MQ=255)                                                                                    aTCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCGAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTgg                                                                 <  2:751878/150‑1 (MQ=255)                                                                                    aTCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTCTGGCGCA‑GCCATaatggagtaatttggca                                                                                                                       <  1:117175‑M2/96‑18 (MQ=255)                                                                                    aTCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTCTGGC‑GCAGCCATaatggagtaatttggca                                                                                                                       >  2:117175‑M2/1‑79 (MQ=255)                                                                                      cttctGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGc                                                               <  2:1986845/150‑1 (MQ=255)                                                                                            aagaaTGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAg                                                         >  2:17815/1‑150 (MQ=255)                                                                                              gaaTGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAggg                                                       >  2:1800608/1‑150 (MQ=255)                                                                                                aTGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGt                                                     <  1:2002415/150‑1 (MQ=255)                                                                                                aTGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGt                                                     <  1:1436516/150‑1 (MQ=255)                                                                                                    gATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGat                                                 >  1:1925878/1‑150 (MQ=255)                                                                                                        gTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTg                                             >  2:1077592/1‑150 (MQ=255)                                                                                                        gTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTg                                             >  1:1975060/1‑150 (MQ=255)                                                                                                                    cATTGTTGCGAGTGATATGCCAAATTACTCCATTctggcgcagccataatggagtaat                                                                                                                              >  1:1001043‑M1/1‑34 (MQ=255)                                                                                                                    cATTGTTGCGAGTGATATGCCAAATTACTCCATTctggcgcagccataatggagtaat                                                                                                                              <  2:1001043‑M1/58‑25 (MQ=255)                                                                                                                         ttgCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTg                            <  1:730359/150‑1 (MQ=255)                                                                                                                             gAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGa                        >  2:1426509/1‑150 (MQ=255)                                                                                                                                tGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGt                     >  2:297754/1‑150 (MQ=255)                                                                                                                                   tatGCCAAATTACTCCATTATGGCTGC‑GCCAGAATACCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGATTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTACACGCTTGCTTCTAGTGCTGACGTAag                  >  2:42877/1‑150 (MQ=255)                                                                                                                                     tGCCAAATTACTCCATTatggctgcgccagaatggagtaatttggcatatcactcgcaacaatgcaataaaagtacaatcccattcttcagaagat                                                                       <  1:117175‑M1/96‑80 (MQ=255)                                                                                                                                     tGCCAAATTACTCCATTatggctgcgccagaatggagtaatttggcatatcactcgcaacaatgcaataaaagtacaatcccattcttcagaagat                                                                       >  2:117175‑M1/1‑17 (MQ=255)                                                                                                                                      gCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCt                          >  2:2153952/1‑139 (MQ=255)                                                                                                                                      gCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCt                          <  1:2153952/139‑1 (MQ=255)                                                                                                                                        cAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGa             >  2:1925899/1‑150 (MQ=255)                                                                                                                                        cAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGa             >  1:616412/1‑150 (MQ=255)                                                                                                                                        cAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGa             >  2:426613/1‑150 (MQ=255)                                                                                                                                         aaaTTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGaa            <  2:2034044/150‑1 (MQ=255)                                                                                                                                           aTTACTCCATTATGGCTGC‑GCCAGaatggagtaatttggcatatcactcgcaacaatg                                                                                                      >  1:1001043‑M2/1‑24 (MQ=255)                                                                                                                                           aTTACTCCATTATGGCTGC‑GCCAGaatggagtaatttggcatatcactcgcaacaatg                                                                                                      <  2:1001043‑M2/58‑35 (MQ=255)                                                                                                                                               cTCCATTATGGCTGC‑GCCAGaatggagtaatttggcatatcactcgcaacaatgcaataaaagtacaatcccattcttcagaagatggaattgagttccgcaacggcgatatttcaattgaaaacaatgatacaattgaagaactaagaa      <  1:1135866‑M2/150‑131 (MQ=255)                                                                                                                                                tCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGAAAGTCTcg     >  2:568198/1‑150 (MQ=255)                                                                                                                                                tCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGAAAGTCTcg     <  2:1330994/150‑1 (MQ=255)                                                                                                                                                 ccATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGAAAGTCTcgc    <  1:928752/150‑1 (MQ=255)                                                                                                                                                  cATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATAtt                                              >  1:1394299/1‑107 (MQ=255)                                                                                                                                                  cATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATAtt                                              <  2:1394299/107‑1 (MQ=255)                                                                                                                                                  cATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGAAAGTCTcgcg   >  1:1533771/1‑150 (MQ=255)                                                                                                                                                   aTTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGAAAGTCTCGCGa  <  1:426613/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAAGCGGATTCAACCTTTTTTCTTAGTTCTTCAATTGTATCATTGTTTTCAATTGAAATATCGCCGTTGCGGAACTCAATTCCATCTTCTGAAGAATGGGATTGTACTTTTATTGCATTGTTGCGAGTGATATGCCAAATTACTCCATTATGGCTGC‑GCCAGAATGCCGCTTCGTTTTCATATCTGATATCCTTAATAATGAAGATGCTTTTACCAGCGGCATTTGTTAGTGGGCGAGTAGGGGTTGATATTGCACGCTTGCTTCTAGTGCTGACGTAAGAGGGAAAGTCTCGCGA  >  NC_002947/2226663‑2226958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.