| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2530824 = | 32 (0.360) | 5 (0.060) | 3/244 | NT | 13.7% | coding (20/369 nt) | PP_2219 | hypothetical protein |
| ? | NC_002947 | = 4908127 | NA (NA) | intergenic (‑58/‑224) | PP_4317/PP_4318 | hypothetical protein/transposase | |||||
AACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCAC > NC_002947/2530675‑2530977 | tcttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccctcggcgcggtcctgccgggag > 2:1297625‑M1/150‑150 (MQ=255) cttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGc < 2:1921738‑M1/2‑1 (MQ=255) ttgatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCa < 2:2147998‑M1/3‑1 (MQ=255) gatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAg < 1:760263‑M1/5‑1 (MQ=255) gatcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctcaggccccaggatggggccttcggcgcggtcctgccgggaGCAAg < 2:640314‑M1/5‑1 (MQ=255) tcttgatcttgatcttgatcttgatcttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCCAGGc < 2:49048‑M1/7‑1 (MQ=255) gcaggccttgcgaaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatc < 2:1060931‑M1/62‑1 (MQ=255) aggccttgcggaggcaggtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaa < 2:807851‑M1/64‑1 (MQ=255) gtgacgggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgcctccGCAAGGCCTGCGTTCGGCCTCCTGAAgtcgcgaagatcaagatcaagatcaagatcaagatcaagatcaagatcaacagcaa < 1:1574847‑M1/82‑7 (MQ=255) aCCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaag > 1:679523/1‑150 (MQ=11) ccGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaaga < 2:1916852/150‑1 (MQ=31) aagcgcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaaga > 1:770507/3‑150 (MQ=14) gggcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatc > 1:1060931‑M1/65‑150 (MQ=255) gcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAgatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaa > 1:807851‑M1/63‑150 (MQ=255) gcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAgatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaa < 1:1603409/150‑1 (MQ=32) gctgaGGCCCCAGGATGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaac > 2:628310/5‑150 (MQ=255) cGATGGCCGCAGCCTGGGGCCTGAGCGTTGGACACGCACCCAGGCCCGTCATCTGCGTCCTCAACGCCGGCGGTCGGCCGGCTGAAGTCTCCAAGGTCCAGATTAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacg < 2:594033/150‑1 (MQ=2) cccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacgg > 2:888132/1‑150 (MQ=38) cccATACTGGGGCCTCAGCGCTTTACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTTAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacgg > 2:590616/1‑150 (MQ=255) cTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacgg < 2:2141337/150‑1 (MQ=38) cTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacgg > 2:1723873/1‑150 (MQ=39) gcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAg > 2:1897987‑M1/46‑50 (MQ=255) gcgctgaggccccaggatggggccttcggcgcggtcctgccgggaGCAAg < 1:1897987‑M1/5‑1 (MQ=255) ccTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTTAAGTCTCGAAGATCAAGATCAAGTTCAAGATCAAGATCAAGATCAAGTTCAAGATCAAGATcaacggcaacgtcaacggcaacgg < 2:666306/150‑1 (MQ=11) aGCGCTTGACGGTCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTTCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcatcggcaacggcaacggcaac < 2:1020377/150‑1 (MQ=255) gcgcTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacg < 1:362481/150‑1 (MQ=40) ttGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacggcaa > 2:1399212/1‑150 (MQ=255) ggCACCCATGCCCGTCACCTGCCCTCCCAAGGCCGTTTTGCGTCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacggcaacggcaa < 2:185906/150‑1 (MQ=14) cATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcgacggcaacggcaacggcaacggcaacggcaacggcaacggcaa > 1:374694/1‑150 (MQ=255) cATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacggcaacggcaacggcaa > 1:804186/1‑150 (MQ=255) aTGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaaga < 1:758509/103‑1 (MQ=31) aTGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGaagatcaagatcaagatcaagatcaagatcaagatcaagatcaagatcaaga > 2:758509/1‑103 (MQ=31) aTGCCCGTCACCTGCCGCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATAAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacggcaacggcaacggcaac < 1:2264448/150‑1 (MQ=255) gCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacggcaacggcaacggcaacgg < 1:2101201/150‑1 (MQ=255) gCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacggcaacggcaacggcaacggcaacggcaacggcaacgg < 1:1297625/150‑1 (MQ=255) gCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacgacaacggcaacggcaacggcaacggcaacggcaacggcaacgg < 1:2333818/150‑1 (MQ=255) cccGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCaacggcaacggcaacggcaacggcaacggcaacggcaacggcaacggc < 1:1723873/150‑1 (MQ=255) cGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcggcaacggcaacggcaacggcaacggcaacggcaacggcaacggcaa > 1:1744072/1‑150 (MQ=255) cGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcggcaacggcaacggcaacggcaacggcaacggcaacggcaacggcaa < 2:804186/150‑1 (MQ=255) cGTCACCGTCCTCAGCAAGGCCATCGTTCGGCCTCCTAAAGTCGCAAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcgccaacggcaacagcaacggcaacggcaacggcaacggcaacggcaa < 2:679523/150‑1 (MQ=17) acgaCCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACggcaacggcaacggcaacggcaacggcaacggcaacggcaacggcaac > 1:81102/4‑150 (MQ=255) aCCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAAcagc > 1:282046/1‑150 (MQ=255) cTGCCTCCGCAAGGCCTGCGTTCGGCCTCGTCAAGAGGTGAAGAACAAGATCAAGAGTAAGCTCAAGAGTGAGATCCACAGCACGGGCCAAGTCAACTGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAACGGCAAcagcag > 1:532262/1‑150 (MQ=9) cTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacg > 2:1107160/1‑104 (MQ=255) cTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacggcaacg < 1:1107160/104‑1 (MQ=255) ccGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCG‑‑‑‑‑‑AAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGcac > 1:1328264/1‑150 (MQ=11) cGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATg > 1:1408154/1‑150 (MQ=255) cGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATg < 2:865765/150‑1 (MQ=255) cGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAAATCAACAACAAGTTCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATg < 1:1908714/150‑1 (MQ=255) cGCAAGGCCTGCGTGCGCGTTTCTGCAGGGCCGAGGATCAAGACCAAGATGCAGTGCAAGATCAAGATTAAAATAATTATCAGGATCAATGGCAACGCCAAGGGTAACGGCTACCGCAATGGCAACGGCAACGGCAACAGTAGGTGGATg < 2:146974/150‑1 (MQ=255) GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATgg < 1:649498‑M1/150‑1 (MQ=255) | AACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAGGTGGATGGGCAC > NC_002947/2530675‑2530977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |